These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GATTGATACTTTTTTGTTCTTTCAACAGATTGAAGAAGTCAATTTTGACCTACATGGAAGAAAACAAAATACTTGGATCAGAGAATGTGGTAGTGACAACTGGGCGTGTATGGAGTACTATGTTGTATGGCCAGTTTTTAGTAACCAGTATCCCTAATATAACTTCACAACTGCATTTGAACAAAATTTTCGCGCAGAAAAATATTAAGTGATGTGTACACGCTAGATCCGCTCAACATAAGCATAAATCAAGAATAAACTACTTTAGATTTATTTGAAAATAACTAATGTTCAACTCTGTGCAAGTTAATACTTCTAACTGTTGGTTGAATGGCTTGAGTAACAAACCGAATTTGCAAAGTTACTTGTTGTGAAGA] [+] EMBL CD117967 [GATTGATACTTTTTTGTTCTTTCAACAGATTGAAGAAGTCAATTTTGACCTACATGGAAGAAAACAAAATACTTGGATCAGAGAATGTGGTAGTGACAACTGGGCGTGTATGGAGTACTATGTTGTATGGCCAGTTTTTAGTAACCAGTATCCCTAATATAACTTCACAACTGCATTTGAACAAAATTTTCGCGCAGAAAAATATTAAGTGATGTGTACACGCTAGATCCGCTCAACATAAGCATAAATCAAGAATAAACTACTTTAGATTTATTTGAAAATAACTAATGTTCAACTCTGTGCAAGTTAATACTTCTAACTGTTGGTTGAATGGCTTGAGTAACAAACCGAATTTGCAAAGTTACTTGTTGTGAAGA] consensusID : consensus_4720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 244 fasta sequence [CCCACCCTTGAAGAGAATGAAAATCACATTTCAGACATTATGGAGGCTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTTTGATCGAAGATTATATCGATAGTTTAGACAAAAGACGCACCCCAACTTGCGTTTGACATCAGTCCAATGAGTGTATCGATTGATACTTTTTTGTTCTCTCAACAGATTGAAGAAGTCAATTTTGACCTTTTCTTTTTC] [+] EMBL CD129362 [CCCACCCTTGAAGAGAATGAAAATCACATTTCAGACATTATGGAGGCTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTTTGATCGAAGATTATATCGATAGTTTAGACAAAAGACGCACCCCAACTTGCGTTTGACATCAGTCCAATGAGTGTATCGATTGATACTTTTTTGTTCTCTCAACAGATTGAAGAAGTCAATTTTGACCTTTTCTTTTTC] [+] EMBL CD129355 [ AATGAAAATC CATTTCAGACATTATGGAGGCTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTTTGATCGAAGATTATATCGATAGTTTAGACAAAAGACGCACCCCAACTTGCGTTTGACATCAGTCCAATGAGTGTATCGATTGATACTTTTTTGTTCTCTCAACAGATTGAAGAAGTCAATTTTGACCTTTTCTTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4720#0 GATTGATACTTTTTTGTTCTTTCAACAGATTGAAGAAGTCAATTTTGACCTACATGGAAG 60 consensus_4720#1 -------------CCCACCCTTGAAGAGAATGAAAATCACATTTCAGACAT-TATGGAGG 46 * ** ** *** **** * ** ** *** * ***** * consensus_4720#0 AAAACAAAATACTTGGATCAGAGAATGTGGTAGTGACAACTGGGCGTGTATGGAGTACTA 120 consensus_4720#1 CTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTT 106 * * * * * * * * * * * ** * ** * * * * ** consensus_4720#0 TGTTGTATGGCCAGTTTTTAGTAACCAGTATCCCTAATATAACTTCACAACTGCATTTGA 180 consensus_4720#1 TGATCGAAGATTA--TATCGATAGTT--TAGACAAAAGACGCACCCCAACTTGCGTTTGA 162 ** * * * * * * ** ** * ** * * * *** ***** consensus_4720#0 ACAAAATTTTCGCGCAGAAAAATATTAAGTGATGTGTACACGCTAGATCCGCTCAACATA 240 consensus_4720#1 -CATCAGTCCAATG----AGTGTATCGATTGATACTT-----TTTTGTTCTCTCAACAGA 212 ** * * * * *** * **** * * * * ******* * consensus_4720#0 A-GCATAAATCAAGAATAAACTACTTTAGATTTATTTGAAAATAACTAATGTTCAACTCT 299 consensus_4720#1 TTGAAGAAGTCAATTTTGACCTTTTCTTTTTC---------------------------- 244 * * ** **** * * ** * * * consensus_4720#0 GTGCAAGTTAATACTTCTAACTGTTGGTTGAATGGCTTGAGTAACAAACCGAATTTGCAA 359 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 AGTTACTTGTTGTGAAGA 377 consensus_4720#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||