cluster # 4720

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Schistosoma mansoni
cluster # 4720 cluster # 4720 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4720#0 length = 377 sequences # 1

consensus_4720#1 length = 244 sequences # 2

consensusID : consensus_4720#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [GATTGATACTTTTTTGTTCTTTCAACAGATTGAAGAAGTCAATTTTGACCTACATGGAAGAAAACAAAATACTTGGATCAGAGAATGTGGTAGTGACAACTGGGCGTGTATGGAGTACTATGTTGTATGGCCAGTTTTTAGTAACCAGTATCCCTAATATAACTTCACAACTGCATTTGAACAAAATTTTCGCGCAGAAAAATATTAAGTGATGTGTACACGCTAGATCCGCTCAACATAAGCATAAATCAAGAATAAACTACTTTAGATTTATTTGAAAATAACTAATGTTCAACTCTGTGCAAGTTAATACTTCTAACTGTTGGTTGAATGGCTTGAGTAACAAACCGAATTTGCAAAGTTACTTGTTGTGAAGA]

[+] EMBL CD117967             [GATTGATACTTTTTTGTTCTTTCAACAGATTGAAGAAGTCAATTTTGACCTACATGGAAGAAAACAAAATACTTGGATCAGAGAATGTGGTAGTGACAACTGGGCGTGTATGGAGTACTATGTTGTATGGCCAGTTTTTAGTAACCAGTATCCCTAATATAACTTCACAACTGCATTTGAACAAAATTTTCGCGCAGAAAAATATTAAGTGATGTGTACACGCTAGATCCGCTCAACATAAGCATAAATCAAGAATAAACTACTTTAGATTTATTTGAAAATAACTAATGTTCAACTCTGTGCAAGTTAATACTTCTAACTGTTGGTTGAATGGCTTGAGTAACAAACCGAATTTGCAAAGTTACTTGTTGTGAAGA]




>consensus_4720#0
GATTGATACTTTTTTGTTCTTTCAACAGATTGAAGAAGTCAATTTTGACCTACATGGAAG
AAAACAAAATACTTGGATCAGAGAATGTGGTAGTGACAACTGGGCGTGTATGGAGTACTA
TGTTGTATGGCCAGTTTTTAGTAACCAGTATCCCTAATATAACTTCACAACTGCATTTGA
ACAAAATTTTCGCGCAGAAAAATATTAAGTGATGTGTACACGCTAGATCCGCTCAACATA
AGCATAAATCAAGAATAAACTACTTTAGATTTATTTGAAAATAACTAATGTTCAACTCTG
TGCAAGTTAATACTTCTAACTGTTGGTTGAATGGCTTGAGTAACAAACCGAATTTGCAAA
GTTACTTGTTGTGAAGA

consensusID : consensus_4720#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 244
fasta sequence

                              [CCCACCCTTGAAGAGAATGAAAATCACATTTCAGACATTATGGAGGCTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTTTGATCGAAGATTATATCGATAGTTTAGACAAAAGACGCACCCCAACTTGCGTTTGACATCAGTCCAATGAGTGTATCGATTGATACTTTTTTGTTCTCTCAACAGATTGAAGAAGTCAATTTTGACCTTTTCTTTTTC]

[+] EMBL CD129362             [CCCACCCTTGAAGAGAATGAAAATCACATTTCAGACATTATGGAGGCTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTTTGATCGAAGATTATATCGATAGTTTAGACAAAAGACGCACCCCAACTTGCGTTTGACATCAGTCCAATGAGTGTATCGATTGATACTTTTTTGTTCTCTCAACAGATTGAAGAAGTCAATTTTGACCTTTTCTTTTTC]
[+] EMBL CD129355             [               AATGAAAATC CATTTCAGACATTATGGAGGCTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTTTGATCGAAGATTATATCGATAGTTTAGACAAAAGACGCACCCCAACTTGCGTTTGACATCAGTCCAATGAGTGTATCGATTGATACTTTTTTGTTCTCTCAACAGATTGAAGAAGTCAATTTTGACCTTTTCTTTTTC]




>consensus_4720#1
CCCACCCTTGAAGAGAATGAAAATCACATTTCAGACATTATGGAGGCTCTTGAGAAAGAT
AAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTTTGATCGAAGATTAT
ATCGATAGTTTAGACAAAAGACGCACCCCAACTTGCGTTTGACATCAGTCCAATGAGTGT
ATCGATTGATACTTTTTTGTTCTCTCAACAGATTGAAGAAGTCAATTTTGACCTTTTCTT
TTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4720#0      GATTGATACTTTTTTGTTCTTTCAACAGATTGAAGAAGTCAATTTTGACCTACATGGAAG 60
consensus_4720#1      -------------CCCACCCTTGAAGAGAATGAAAATCACATTTCAGACAT-TATGGAGG 46
                                        * ** ** *** **** *   ** **  *** *  ***** *

consensus_4720#0      AAAACAAAATACTTGGATCAGAGAATGTGGTAGTGACAACTGGGCGTGTATGGAGTACTA 120
consensus_4720#1      CTCTTGAGAAAGATAAAAGATTTATCGCCTTGGATGCTTTTGAGGATGAACGTAATGCTT 106
                            * * *  *  *  *   *  *   * *   *   ** *  ** * * * * ** 

consensus_4720#0      TGTTGTATGGCCAGTTTTTAGTAACCAGTATCCCTAATATAACTTCACAACTGCATTTGA 180
consensus_4720#1      TGATCGAAGATTA--TATCGATAGTT--TAGACAAAAGACGCACCCCAACTTGCGTTTGA 162
                      ** *  * *   *  * *   **     **  *  ** *      *  *  *** *****

consensus_4720#0      ACAAAATTTTCGCGCAGAAAAATATTAAGTGATGTGTACACGCTAGATCCGCTCAACATA 240
consensus_4720#1      -CATCAGTCCAATG----AGTGTATCGATTGATACTT-----TTTTGTTCTCTCAACAGA 212
                       **  * *     *    *   ***  * ****   *      *   * * ******* *

consensus_4720#0      A-GCATAAATCAAGAATAAACTACTTTAGATTTATTTGAAAATAACTAATGTTCAACTCT 299
consensus_4720#1      TTGAAGAAGTCAATTTTGACCTTTTCTTTTTC---------------------------- 244
                        * * ** ****   * * **  * *   *                             

consensus_4720#0      GTGCAAGTTAATACTTCTAACTGTTGGTTGAATGGCTTGAGTAACAAACCGAATTTGCAA 359
consensus_4720#1      ------------------------------------------------------------
                                                                                  

consensus_4720#0      AGTTACTTGTTGTGAAGA 377
consensus_4720#1      ------------------