cluster # 4722

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Schistosoma mansoni
cluster # 4722 cluster # 4722 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4722#0 length = 743 sequences # 2

consensus_4722#1 length = 464 sequences # 1

consensusID : consensus_4722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 743
fasta sequence

                              [NAATTCGGCACGAGGACCATANCCAGGAAAAGATACTAAATAATTGGACTAATATACTAGCTCCCAGCTGAAAACGAATGTAAGGCCAATAAAAGTTACCTTCTATCCACTAAATCTCGTTGTTTACGCATATCAGTCTTTTCTTTCATTCGAGCTATTTCTTTTTATTTCACTTATTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAATCTTGTTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTGTAGTTAGTTGCANAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTTGTACTATGCTATTTTTTCCA-GGCTGTAGTCGGAG-ACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACACCTTCGTGCTGAACCTCTTAAATCCTGTTGTACATTAAAATATGGTTACATATAACAAATAAATTGCTATC]

[+] EMBL CD081399             [NAATTCGGCACGAGGACCATANCCAGGAAAAGATACTAAATAATTGGACTAATATACTAGCTCCCAGCTGAAAACGAATGTAAGGCCAATAAAAGTTACCTTCTATCCACTAAATCTCGTTGTTTACGCATATCAGTCTTTTCTTTCATTCGAGCTATTTCTTTTTATTTCACTTATTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAATCTTGTTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTGTAGTTAGTTGCANAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTTGTACTATGCTATTTTTTCCA GGCTGTAGTCGGAG ACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACACCTTCGTGCTGAACCTCTTAAATCCTGTTGTACATTAAAATATGGTTACATATAACAAATAAATTGCTATC]
[-] EMBL CD075230             [                                                                                                                                                                                                                                                        CAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAATCTTGTTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTGTAGTTAGTTGCAAAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTTGTACTATGCTATTTTTTCCAGGGCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACAACTTCGTGCTGAACCTCTT AATCCTGTTGTACATTAAATTATGTTTACATATAACAAATAAATTGCTATC]




>consensus_4722#0
NAATTCGGCACGAGGACCATANCCAGGAAAAGATACTAAATAATTGGACTAATATACTAG
CTCCCAGCTGAAAACGAATGTAAGGCCAATAAAAGTTACCTTCTATCCACTAAATCTCGT
TGTTTACGCATATCAGTCTTTTCTTTCATTCGAGCTATTTCTTTTTATTTCACTTATTTT
CGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGA
TGTACACGCAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCA
TCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTT
ATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAAT
CTTGTTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTT
CCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTGT
AGTTAGTTGCANAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTTG
TACTATGCTATTTTTTCCAGGCTGTAGTCGGAGACTTGATGAAGATCTAGATAGGCGAAT
TGATTTTTCACACCTTCGTGCTGAACCTCTTAAATCCTGTTGTACATTAAAATATGGTTA
CATATAACAAATAAATTGCTATC

consensusID : consensus_4722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [TTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTTAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAAAGGTGTCAATTCTGGTTTTCAAAAATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGGCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACAACTTCGTGCTGAACCTCTTAATCCTGTTGTACATTAAATTATGTTTACATATAACAAATAAATTGCTATC]

[-] EMBL AI975893             [TTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTTAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAAAGGTGTCAATTCTGGTTTTCAAAAATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGGCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACAACTTCGTGCTGAACCTCTTAATCCTGTTGTACATTAAATTATGTTTACATATAACAAATAAATTGCTATC]




>consensus_4722#1
TTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGT
AGGATGTACACGCAATCAATTTTAGTGGATCAGTAAACAGAATATCAATATTGCATATCT
ATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAA
TGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAAAGGTGT
CAATTCTGGTTTTCAAAAATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAAC
AAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGGCTGTAGTCGGAGAACTTG
ATGAAGATCTAGATAGGCGAATTGATTTTTCACAACTTCGTGCTGAACCTCTTAATCCTG
TTGTACATTAAATTATGTTTACATATAACAAATAAATTGCTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4722#0      NAATTCGGCACGAGGACCATANCCAGGAAAAGATACTAAATAATTGGACTAATATACTAG 60
consensus_4722#1      ------------------------------------------------------------
                                                                                  

consensus_4722#0      CTCCCAGCTGAAAACGAATGTAAGGCCAATAAAAGTTACCTTCTATCCACTAAATCTCGT 120
consensus_4722#1      ------------------------------------------------------------
                                                                                  

consensus_4722#0      TGTTTACGCATATCAGTCTTTTCTTTCATTCGAGCTATTTCTTTTTATTTCACTTATTTT 180
consensus_4722#1      --------------------------------------------------------TTTT 4
                                                                              ****

consensus_4722#0      CGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGA 240
consensus_4722#1      CGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGA 64
                      ************************************************************

consensus_4722#0      TGTACACGCAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCA 300
consensus_4722#1      TGTACACGCAATCAATTTTAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCA 124
                      ****************** *****************************************

consensus_4722#0      TCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTT 360
consensus_4722#1      TCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTT 184
                      ************************************************************

consensus_4722#0      ATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAAT 420
consensus_4722#1      ATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAAAGGTGTCAAT 244
                      ************************************************** * *******

consensus_4722#0      CTTG-TTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGT 479
consensus_4722#1      TCTGGTTTTCAAAAATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGT 304
                        ** ** ***** **********************************************

consensus_4722#0      TCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTG 539
consensus_4722#1      TCCATTGGGTTTATTTATTATTCGAGGACAGAATGTG----------------------- 341
                      *************************************                       

consensus_4722#0      TAGTTAGTTGCANAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTT 599
consensus_4722#1      ------------------------------------------------------------
                                                                                  

consensus_4722#0      GTACTATGCTATTTTTTCCAGGCTGTAGTCGGAGA-CTTGATGAAGATCTAGATAGGCGA 658
consensus_4722#1      ---------------------GCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGA 380
                                           ************** ************************

consensus_4722#0      ATTGATTTTTCACACCTTCGTGCTGAACCTCTTAAATCCTGTTGTACATTAAAATATGGT 718
consensus_4722#1      ATTGATTTTTCACAACTTCGTGCTGAACCTCTTAA-TCCTGTTGTACATTAAATTATGTT 439
                      ************** ******************** ***************** **** *

consensus_4722#0      TACATATAACAAATAAATTGCTATC 743
consensus_4722#1      TACATATAACAAATAAATTGCTATC 464
                      *************************