These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence [NAATTCGGCACGAGGACCATANCCAGGAAAAGATACTAAATAATTGGACTAATATACTAGCTCCCAGCTGAAAACGAATGTAAGGCCAATAAAAGTTACCTTCTATCCACTAAATCTCGTTGTTTACGCATATCAGTCTTTTCTTTCATTCGAGCTATTTCTTTTTATTTCACTTATTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAATCTTGTTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTGTAGTTAGTTGCANAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTTGTACTATGCTATTTTTTCCA-GGCTGTAGTCGGAG-ACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACACCTTCGTGCTGAACCTCTTAAATCCTGTTGTACATTAAAATATGGTTACATATAACAAATAAATTGCTATC] [+] EMBL CD081399 [NAATTCGGCACGAGGACCATANCCAGGAAAAGATACTAAATAATTGGACTAATATACTAGCTCCCAGCTGAAAACGAATGTAAGGCCAATAAAAGTTACCTTCTATCCACTAAATCTCGTTGTTTACGCATATCAGTCTTTTCTTTCATTCGAGCTATTTCTTTTTATTTCACTTATTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAATCTTGTTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTGTAGTTAGTTGCANAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTTGTACTATGCTATTTTTTCCA GGCTGTAGTCGGAG ACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACACCTTCGTGCTGAACCTCTTAAATCCTGTTGTACATTAAAATATGGTTACATATAACAAATAAATTGCTATC] [-] EMBL CD075230 [ CAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAATCTTGTTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTGTAGTTAGTTGCAAAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTTGTACTATGCTATTTTTTCCAGGGCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACAACTTCGTGCTGAACCTCTT AATCCTGTTGTACATTAAATTATGTTTACATATAACAAATAAATTGCTATC] consensusID : consensus_4722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [TTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTTAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAAAGGTGTCAATTCTGGTTTTCAAAAATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGGCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACAACTTCGTGCTGAACCTCTTAATCCTGTTGTACATTAAATTATGTTTACATATAACAAATAAATTGCTATC] [-] EMBL AI975893 [TTTTCGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGATGTACACGCAATCAATTTTAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCATCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTTATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAAAGGTGTCAATTCTGGTTTTCAAAAATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGTTCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGGCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGAATTGATTTTTCACAACTTCGTGCTGAACCTCTTAATCCTGTTGTACATTAAATTATGTTTACATATAACAAATAAATTGCTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4722#0 NAATTCGGCACGAGGACCATANCCAGGAAAAGATACTAAATAATTGGACTAATATACTAG 60 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 CTCCCAGCTGAAAACGAATGTAAGGCCAATAAAAGTTACCTTCTATCCACTAAATCTCGT 120 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 TGTTTACGCATATCAGTCTTTTCTTTCATTCGAGCTATTTCTTTTTATTTCACTTATTTT 180 consensus_4722#1 --------------------------------------------------------TTTT 4 **** consensus_4722#0 CGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGA 240 consensus_4722#1 CGTTACAATAACTTTGAATGTATTCATCAAATATTTCATGTATAGTCTATGCTCGTAGGA 64 ************************************************************ consensus_4722#0 TGTACACGCAATCAATTTCAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCA 300 consensus_4722#1 TGTACACGCAATCAATTTTAGTGGATCAGTAAACAGAATATCAATATTGCATATCTATCA 124 ****************** ***************************************** consensus_4722#0 TCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTT 360 consensus_4722#1 TCTAGGGAATTCTACTTTCTTTAACCATTTTCTTTATATATACCAGGAATGGTAAATGTT 184 ************************************************************ consensus_4722#0 ATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAATGTTGTCAAT 420 consensus_4722#1 ATAACATCAGATGGAAGAACTATTGTCGGTACATTAAAAGGATTTGATAAAGGTGTCAAT 244 ************************************************** * ******* consensus_4722#0 CTTG-TTATCAAAGATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGT 479 consensus_4722#1 TCTGGTTTTCAAAAATAGCCATGAACGAGTTTTCAGTCCAACTGAAGGTGTTGAACAAGT 304 ** ** ***** ********************************************** consensus_4722#0 TCCATTGGGTTTATTTATTATTCGAGGACAGAATGTGTAAGTTGTGTTGATATAAAGCTG 539 consensus_4722#1 TCCATTGGGTTTATTTATTATTCGAGGACAGAATGTG----------------------- 341 ************************************* consensus_4722#0 TAGTTAGTTGCANAATTACTAGTTCTGAGGTTGAAACTTTAAATGATGCAATATTTATTT 599 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 GTACTATGCTATTTTTTCCAGGCTGTAGTCGGAGA-CTTGATGAAGATCTAGATAGGCGA 658 consensus_4722#1 ---------------------GCTGTAGTCGGAGAACTTGATGAAGATCTAGATAGGCGA 380 ************** ************************ consensus_4722#0 ATTGATTTTTCACACCTTCGTGCTGAACCTCTTAAATCCTGTTGTACATTAAAATATGGT 718 consensus_4722#1 ATTGATTTTTCACAACTTCGTGCTGAACCTCTTAA-TCCTGTTGTACATTAAATTATGTT 439 ************** ******************** ***************** **** * consensus_4722#0 TACATATAACAAATAAATTGCTATC 743 consensus_4722#1 TACATATAACAAATAAATTGCTATC 464 ************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||