cluster # 473

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Schistosoma mansoni
cluster # 473 cluster # 473 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_473#0 length = 138 sequences # 1

consensus_473#1 length = 116 sequences # 1

consensusID : consensus_473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [ACAATGGCTACTAAGAACACGATGTGAGTGACTGTTTCATTTTCCAAATTGTTGTTGTTGTTGAATAGATGTAATAGTTTGGAGTTTATGTGTTGATGTGAATGTTGGTAAATTGTTGTGTAGTGTTTCTGGTAGGTG]

[+] EMBL CD128566             [ACAATGGCTACTAAGAACACGATGTGAGTGACTGTTTCATTTTCCAAATTGTTGTTGTTGTTGAATAGATGTAATAGTTTGGAGTTTATGTGTTGATGTGAATGTTGGTAAATTGTTGTGTAGTGTTTCTGGTAGGTG]




>consensus_473#0
ACAATGGCTACTAAGAACACGATGTGAGTGACTGTTTCATTTTCCAAATTGTTGTTGTTG
TTGAATAGATGTAATAGTTTGGAGTTTATGTGTTGATGTGAATGTTGGTAAATTGTTGTG
TAGTGTTTCTGGTAGGTG

consensusID : consensus_473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [GCTGCCTGCGAGGTCGACTTTAGAAGGATCCCCCGGTGGCGTAACCAATGGCTACTAAAAAGACGAGTGTGAGTGACTGTTTCATTTTTCAAATTGTTGGTGTTGTTGTACTGGGT]

[+] EMBL CD126456             [GCTGCCTGCGAGGTCGACTTTAGAAGGATCCCCCGGTGGCGTAACCAATGGCTACTAAAAAGACGAGTGTGAGTGACTGTTTCATTTTTCAAATTGTTGGTGTTGTTGTACTGGGT]




>consensus_473#1
GCTGCCTGCGAGGTCGACTTTAGAAGGATCCCCCGGTGGCGTAACCAATGGCTACTAAAA
AGACGAGTGTGAGTGACTGTTTCATTTTTCAAATTGTTGGTGTTGTTGTACTGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_473#0      ACAATGGCTACTAAGAACACGATGTGAGTGACTGTTTCATTTTCCAAATTGTTGTTGTTG 60
consensus_473#1      --GCTGCCTGCGAGGTCGAC--TTTAGAAGGATCCCCCGGTGGCGTAACCAATG--GCTA 54
                         ** ** * * *   **  * *    *  *    *  *  *  **    **  * * 

consensus_473#0      TTGAATAGATGTAATAGTTTGGAGTTTATGTGTTGATGTGAATGTTGGTAAATTGTTGTG 120
consensus_473#1      CTAAAAAGACG--AGTGTGAGTGACTGTTTCATTTTTCAAATTGTTGGT--GTTGTTGTA 110
                      * ** *** *  *  **  *    *  *   **  *   * *******   ******* 

consensus_473#0      TAGTGTTTCTGGTAGGTG 138
consensus_473#1      CTGGGT------------ 116
                       * **