cluster # 4730

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Schistosoma mansoni
cluster # 4730 cluster # 4730 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4730#0 length = 583 sequences # 2

consensus_4730#1 length = 472 sequences # 1

consensusID : consensus_4730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 583
fasta sequence

                              [CAAATGCATATTTACCAGTTGGAATCATCGTAGGACGAGCCGAAATAAACATGCATCAAACTAATCTATCCATTTGACAAATTTCACTTAAATGAGACCCTCCTTAACGTTTTCAATCAATATACCATTCTTTACTCGTTCATAATTTGACTTACACAGTTGATTGGGTTTATTATGTTTGTGATAGGTGTATGAGTGGGATCAATGTATGGTCTATTCAGTGTAGACAGATATAGTATTTTATATGTATCTAGTTTATTGTTTATTACAAAGAGGTTTACGTTAACAGTGGAATTTTTTGTACAATAATTATTGAGAACCCATTATTTGTTTTTCGTATACGATGTTATTGCCTACTCCATTGTCGTTCATTTCAATATCCTTACTTCTCTNGGTGGTTCCGTTTCTTGAAATATGACAAGTTAGATTTATGTATTTATCCTACAATGTCTGCTTCATTANCTCACTTTTTCTACATTCTGTTAATCCCGGTTTTCATACATAAAGATTTNCTTTTAGTTNGTATACTGCATTACATGGATGTTAAGTATTATCATTTAAATATAGCTACAAGTATGGGGTA]

[-] EMBL CD068987             [CAAATGCATATTTACCAGTTGGAATCATCGTAGGACGAGCCGAAATAAACATGCATCAAACTAATCTATCCATTTGACAAATTTCACTTAAATGAGACCCTCCTTAACGTTTTCAATCAATATACCATTCTTTACTCGTTCATAATTTGACTTACACAGTTGATTGGGTTTATTATGTTTGTGATAGGTGTATGAGTGGGATCAATGTATGGTCTATTCAGTGTAGACAGATATAGTATTTTATATGTATCTAGTTTATTGTTTATTACAAAGAGGTTTACGTTAACAGTGGAATTTTTTGTACAATAATTATTGAGAACCCATTATTTGTTTTTCGTATACGATGTTATTGCCTACTCCATTGTCGTTCATTTCAATATCCTTACTTCTCT                                                                                                                                                                                               ]
[+] EMBL SM7561               [                                                                                                                                                                                                                                             ATNTTATATGTATCTAGTTTATNGTTTATTACAAAGAGGTTTACGTTAACAGTGGAATTTTTTGTACAATAATTATTGAGAACCCATTATTNG TTTTCGTATACGATGTTATTGCCTACTCCATTGTCGTTCATTTCAATATCCTTACTTCTCTNGGTGGTTCCGTTTCTTGAAATATGACAAGTTAGATTTATGTATTTATCCTACAATGTCTGCTTCATTANCTCACTTTTTCTACATTCTGTTAATCCCGGTTTTCATACATAAAGATTTNCTTTTAGTTNGTATACTGCATTACATGGATGTTAAGTATTATCATTTAAATATAGCTACAAGTATGGGGTA]




>consensus_4730#0
CAAATGCATATTTACCAGTTGGAATCATCGTAGGACGAGCCGAAATAAACATGCATCAAA
CTAATCTATCCATTTGACAAATTTCACTTAAATGAGACCCTCCTTAACGTTTTCAATCAA
TATACCATTCTTTACTCGTTCATAATTTGACTTACACAGTTGATTGGGTTTATTATGTTT
GTGATAGGTGTATGAGTGGGATCAATGTATGGTCTATTCAGTGTAGACAGATATAGTATT
TTATATGTATCTAGTTTATTGTTTATTACAAAGAGGTTTACGTTAACAGTGGAATTTTTT
GTACAATAATTATTGAGAACCCATTATTTGTTTTTCGTATACGATGTTATTGCCTACTCC
ATTGTCGTTCATTTCAATATCCTTACTTCTCTNGGTGGTTCCGTTTCTTGAAATATGACA
AGTTAGATTTATGTATTTATCCTACAATGTCTGCTTCATTANCTCACTTTTTCTACATTC
TGTTAATCCCGGTTTTCATACATAAAGATTTNCTTTTAGTTNGTATACTGCATTACATGG
ATGTTAAGTATTATCATTTAAATATAGCTACAAGTATGGGGTA

consensusID : consensus_4730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CACAAGTTGGGAAAGTCTGTCTATTTTTAATAGTAAATTCTAAACTCAACAAGTACACACGTGTATCATATCATTTTATCGATAACTCATGTATACTTCACAGAAATTGCTCTTTAACATTATCTTCTGCATTTATTATTGTAAATGTTGAGGTTGTTTTTGTTTATGTGTTGTATATTTGTTGCCTCTCTGTTTCTAATATATGTTTGACTTTAACGTGTAAAACTTGCAGTTTCAATTCTCTTCCATGCATCTTCCTCCTCAGCACAAATGCATATTTACCAGTNGGAATCCTCCGTAGGACGAGCCGAAATAAACATGCATCAAACTAATCTATCCATTTGACAAATTCCCTTAAATGANANCCCCCTTAACATTTTCCATCAATNACCATCCTTACCCGTCCANAATTGAACTACCCGGTGAANGGGGTTAATAGTTTGNGAAGGGTTTNAATGGAACNAGTTTGGCC]

[+] EMBL AW466261             [CACAAGTTGGGAAAGTCTGTCTATTTTTAATAGTAAATTCTAAACTCAACAAGTACACACGTGTATCATATCATTTTATCGATAACTCATGTATACTTCACAGAAATTGCTCTTTAACATTATCTTCTGCATTTATTATTGTAAATGTTGAGGTTGTTTTTGTTTATGTGTTGTATATTTGTTGCCTCTCTGTTTCTAATATATGTTTGACTTTAACGTGTAAAACTTGCAGTTTCAATTCTCTTCCATGCATCTTCCTCCTCAGCACAAATGCATATTTACCAGTNGGAATCCTCCGTAGGACGAGCCGAAATAAACATGCATCAAACTAATCTATCCATTTGACAAATTCCCTTAAATGANANCCCCCTTAACATTTTCCATCAATNACCATCCTTACCCGTCCANAATTGAACTACCCGGTGAANGGGGTTAATAGTTTGNGAAGGGTTTNAATGGAACNAGTTTGGCC]




>consensus_4730#1
CACAAGTTGGGAAAGTCTGTCTATTTTTAATAGTAAATTCTAAACTCAACAAGTACACAC
GTGTATCATATCATTTTATCGATAACTCATGTATACTTCACAGAAATTGCTCTTTAACAT
TATCTTCTGCATTTATTATTGTAAATGTTGAGGTTGTTTTTGTTTATGTGTTGTATATTT
GTTGCCTCTCTGTTTCTAATATATGTTTGACTTTAACGTGTAAAACTTGCAGTTTCAATT
CTCTTCCATGCATCTTCCTCCTCAGCACAAATGCATATTTACCAGTNGGAATCCTCCGTA
GGACGAGCCGAAATAAACATGCATCAAACTAATCTATCCATTTGACAAATTCCCTTAAAT
GANANCCCCCTTAACATTTTCCATCAATNACCATCCTTACCCGTCCANAATTGAACTACC
CGGTGAANGGGGTTAATAGTTTGNGAAGGGTTTNAATGGAACNAGTTTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4730#0      CAAATGCATATTTACCAGTTGGAATCATCGTAGGACGAGCCGAAATAAACATGCATCAAA 60
consensus_4730#1      ------------------------------------------------------------
                                                                                  

consensus_4730#0      CTAATCTATCCATTTGACAAATTTCACTTAAATGAGACCCTCCTTAACGTTTTCAATCA- 119
consensus_4730#1      --------------------------CACAAGTTGGGAAAGTCTGTCTATTTTTAATAGT 34
                                                *  ** *  *      **     **** ***   

consensus_4730#0      ATATACCATTCTTTACTCGTTCATAATTTGACTTACACAGTTGATTGG--GTTTAT-TAT 176
consensus_4730#1      AAATTCTAAACTCAACAAGTACACACGTGTATCATATCATTTTATCGATAACTCATGTAT 94
                      * ** * *  **  **  ** ** *  *  *      ** ** ** *     * ** ***

consensus_4730#0      GTTTGTGATAGGTGTATGAGTGGGATCAATGTATGGTCTATTCAGTGTAGACAGATATAG 236
consensus_4730#1      ACTTCACAGAAATTGCTCTTTAACATTATCTTCTGCATTTATTATTGTAAAT-GTTGAGG 153
                        **   * *  *   *   *   ** *   * **   *  * * **** *  * *   *

consensus_4730#0      TATTTTATATGTATCTAGTTTATTGTTTATTACAAAGAGGTTTACGTTA-ACAGTGGAAT 295
consensus_4730#1      TTGTTTTTGTTTATGTGTTGTAT-ATTTGTTGCCTCTCTGTTTCTAATATATGTTTGACT 212
                      *  *** * * *** *  * ***  *** ** *      ****    ** *   * ** *

consensus_4730#0      TTTTTGTACAATAATTATTGAGAACCCATTATTTGTTTTTCGTATACGATGTTATTGCCT 355
consensus_4730#1      TTAACGTGTAAAACTTGCAG------TTTCAATTCTCTTCCATGCA---TCTTCCTCCTC 263
                      **   **  ** * **   *        * * ** * ** * *  *   * **  * *  

consensus_4730#0      ACTCCATTGTCGTTCATTTCAATATCCTTACTTCTCTNGGTGGTTCCGTTTCTTGAAATA 415
consensus_4730#1      AGCACAAATGCATATTTACCAGTNGGAATCCTCCGTAGGACGAGCCGAAAT----AAACA 319
                      *   **    * *   *  ** *     * ** *    *  *   *    *    *** *

consensus_4730#0      TGACAAGTTAGATTTATGTATTTATCCTACAATGTCTGCTTCATTANCTCACTTTTTCTA 475
consensus_4730#1      TGC---ATCAAACTAATCTATCCATTTGACAAATTCCCTTAAATGANANCCCCCTTAACA 376
                      **     * * * * ** ***  **   ****  **   *  ** **  * *  **   *

consensus_4730#0      CATTCTGTTAATCCCGGTTTTCATACATAAAGATTTNCTTTTAGTTNGTATACTGCATTA 535
consensus_4730#1      TTTTCCATCAATNACCATCCTTACCCGTCCANAATTGAACT-ACCCGGTGAANGGGGTTA 435
                        ***  * ***  *  *  * *  * *  * * **    * *    **  *  *  ***

consensus_4730#0      CATGGATGTTAAGTATTATCATTTAAATATAGCTACAAGTATGGGGTA 583
consensus_4730#1      ATAGTTTGNGAAGG------GTTTNAATGGA---ACNAGTTTGGCC-- 472
                         *  **  ***        *** ***  *   ** *** ***