cluster # 4735

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Schistosoma mansoni
cluster # 4735 cluster # 4735 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4735#0 length = 451 sequences # 1

consensus_4735#1 length = 326 sequences # 2

consensusID : consensus_4735#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [ATATAAAGAAGATGTAGGGGGAGACATTGGGGCACGTGGAAGTCTACGCGGAGAGTGATGTGTGATAACAAGCAGAACTTGAAACGGGAGTCTGTGATTCTCTCCATTGGAATTGGAGCTTGAGGCGCTATGCTTAGACTGCTTGACAACCGGAACGGGAACGAGTGGTTGAGCGTGTCGGCTAACATGGAGGCGTAATATGGAGAAGTTGGTGAAGGCGTATTTGAGGGTGAGACGGAAGCCGAGTCGGACAGTCTAAGTGTTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGA]

[+] EMBL CD168676             [ATATAAAGAAGATGTAGGGGGAGACATTGGGGCACGTGGAAGTCTACGCGGAGAGTGATGTGTGATAACAAGCAGAACTTGAAACGGGAGTCTGTGATTCTCTCCATTGGAATTGGAGCTTGAGGCGCTATGCTTAGACTGCTTGACAACCGGAACGGGAACGAGTGGTTGAGCGTGTCGGCTAACATGGAGGCGTAATATGGAGAAGTTGGTGAAGGCGTATTTGAGGGTGAGACGGAAGCCGAGTCGGACAGTCTAAGTGTTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGA]




>consensus_4735#0
ATATAAAGAAGATGTAGGGGGAGACATTGGGGCACGTGGAAGTCTACGCGGAGAGTGATG
TGTGATAACAAGCAGAACTTGAAACGGGAGTCTGTGATTCTCTCCATTGGAATTGGAGCT
TGAGGCGCTATGCTTAGACTGCTTGACAACCGGAACGGGAACGAGTGGTTGAGCGTGTCG
GCTAACATGGAGGCGTAATATGGAGAAGTTGGTGAAGGCGTATTTGAGGGTGAGACGGAA
GCCGAGTCGGACAGTCTAAGTGTTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAG
AAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAAT
TGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGC
GTGTCGGTGAGATGGAGGCGGAATATGGTGA

consensusID : consensus_4735#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 326
fasta sequence

                              [CGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGTGTATTTGAAGGTGAGACGGAAGCCGAGTCGGTCCGTCGTGGTTGTTTTGTAGGCCAGGTTGAGCAAATGTTTAATTATCTTGCATTGTATCCAATAGATGTGATGTACACCAAAATACATCAGCCTCAACTGAATTCAATTGTTCACAAGTAATATCCGAATGTAGACTTAATTCACCTGATGTATTTAAATCAACATGTGTGTATTCTGATAAAAATACAATGAAGAATGGAGTTAACAAATCATTTATACCTTGTACATAA]

[+] EMBL CD192351             [CGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGTGTATTTGAAGGTGAGACGGAAGCCGAGTCGGTCCGTCGTGGTTGTTTTGTAGGCCAGGTTGAGCAAATGTTTAATTATCTTGCATTGTATCCAATAGATGTGATGTACACCAAAATACATCAGCCTCAACTGAATTCAATTGTTCACAAGTAATATCCGAATGTAGACTTAATTCACCTGATGTATTTAAATCAACATGTGTGTATTCTGATAAAAATACAATGAAGAATGGAGTTAACAAATCATTTATACCTTGTACATAA]
[+] EMBL CD192408             [CGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGTGTATTTGAAGGTGAGACGGAAGCCGAGTCGGTCCGTCGTGGTTGTTTTGTAGGCCAGGTTGAGCAAATGTTTAATTATCTTGCATTGTATCCAATAGATGTGATGTACACCAAAATACATCAGCCTCAACTGAATTCAATTGTTCACAAGTAATATCCGAATGTAGACTTAATTCACCTGATGTATTTAAATCAACATGTGTGTATTCTGATAAAAATACAATGAAGAATGGAGTTAACAAATCATTTATACCTTGTACATAA]




>consensus_4735#1
CGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAA
GGTGTATTTGAAGGTGAGACGGAAGCCGAGTCGGTCCGTCGTGGTTGTTTTGTAGGCCAG
GTTGAGCAAATGTTTAATTATCTTGCATTGTATCCAATAGATGTGATGTACACCAAAATA
CATCAGCCTCAACTGAATTCAATTGTTCACAAGTAATATCCGAATGTAGACTTAATTCAC
CTGATGTATTTAAATCAACATGTGTGTATTCTGATAAAAATACAATGAAGAATGGAGTTA
ACAAATCATTTATACCTTGTACATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4735#0      ATATAAAGAAGATGTAGGGGGAGACATTGGGGCACGTGGAAGTCTACGCGGAGAGTGATG 60
consensus_4735#1      ------------------------------------------------------------
                                                                                  

consensus_4735#0      TGTGATAACAAGCAGAACTTGAAACGGGAGTCTGTGATTCTCTCCATTGGAATTGGAGCT 120
consensus_4735#1      ------------------------------------------------------------
                                                                                  

consensus_4735#0      TGAGGCGCTATGCTTAGACTGCTTGACAACCGGAACGGGAACGAGTGGTTGAGCGTGTCG 180
consensus_4735#1      -----------------------------------CGGGAACGATTGGTTGAGCGTGTCG 25
                                                         ********* ***************

consensus_4735#0      GCTAACATGGAGGCGTAATATGGAGAAGTTGGTGAAGGCGTATTTGAGGGTGAGACGGAA 240
consensus_4735#1      G-TGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGTGTATTTGAAGGTGAGACGGAA 84
                      * * * ********* ******* ************** ******** ************

consensus_4735#0      GCCGAGTCGGACAGTCTAAGTGTTTCGGTGAGACAT-TGGGGCAAGT------------T 287
consensus_4735#1      GCCGAGTCGGTCCGTCGTGGTTGTTTTGTAGGCCAGGTTGAGCAAATGTTTAATTATCTT 144
                      ********** * ***   **  **  **  * **  * * **** *            *

consensus_4735#0      GAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGA---ACGTGTGTCTGTG 344
consensus_4735#1      GCATTGTATCCAATAGATGTGATG-TACACCAAAATACATCAGCCTCAACTGAATTCAAT 203
                      * *  * *  **  *  **   ** ** * **   *  *** *    *  **  *     

consensus_4735#0      TTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGG 404
consensus_4735#1      TGTTCACAAGTAATATCCGAATGTAGACTTAATTCACCTGATGTATTTAAATCAACATGT 263
                      *   * * ***   **  ** * *        * **     ** *    ** *   * * 

consensus_4735#0      GAACGATTGGTTGAGCGTGTCGGTGAGA-TGGAGGCGGAATATGGTGA------------ 451
consensus_4735#1      GTGTATTCTGATAAAAATACAATGAAGAATGGAGTTAACAAATCATTTATACCTTGTACA 323
                      *     *  * * *   *       *** *****     * **  *              

consensus_4735#0      ---
consensus_4735#1      TAA 326