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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence
[TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACAAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNAT-ACACAC]
[+] EMBL CD160779 [TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACAAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNAT ACACA ]
[-] EMBL CD160759 [ gTTAAAATGAATAGGTAAGTGT AAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAANATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGANAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACGAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACCCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTTTGACCGAAATAAATGAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACAAATGCGATCAAAAAATAGTCTTGAATAATCGAAT AATAACACAC]
consensusID : consensus_4741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[TGTCGGTGGGTAGGCATTATATAACGTGGGTAAGAACCGATGTTAATTGATTTTGAATATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTAGGAATCTTATTTATTATATGAAGTGTAGTGACCTAACTTGGTTGCCTTAATCAAAGTGTTTAGGAGAATTACTAATTGGTTGAAACACTTGGCTTTAAGATATTTAGTTTCAGATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATATCGCTGTTTTTTTCCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTATTGCCACTACAATTATTTGGTATCCTTTGGTATTTGTCTTGTTGACTTCACTTTGTTCTACCAAATTCTAATCTTCTGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTCCTTCAATAACGTCTTCAAACTCCAATCTTTCACAAAATG]
[+] EMBL CD088356 [TGTCGGTGGGTAGGCATTATATAACGTGGGTAAGAACCGATGTTAATTGATTTTGAATATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTAGGAATCTTATTTATTATATGAAGTGTAGTGACCTAACTTGGTTGCCTTAATCAAAGTGTTTAGGAGAATTACTAATTGGTTGAAACACTTGGCTTTAAGATATTTAGTTTCAGATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATATCGCTGTTTTTTTCCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTATTGCCACTACAATTATTTGGTATCCTTTGGTATTTGTCTTGTTGACTTCACTTTGTTCTACCAAATTCTAATCTTCTGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTCCTTCAATAACGTCTTCAAACTCCAATCTTTCACAAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4741#0 TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCG 60
consensus_4741#1 ------------------------------------------------------------
consensus_4741#0 AACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGA 120
consensus_4741#1 ---------------------------------------------------------TGT 3
**
consensus_4741#0 CTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAA 180
consensus_4741#1 CGGTGGGTAGGCATTAT---ATAACGTGGGTAAGAACCGATGTT--AAT-TGATTTTGAA 57
* *** * * **** * * * ** ****** *** * *******
consensus_4741#0 CACGAACTGACGCTTTA-TACAAGTTGTCGTCTCCATTCAAAGTTTTAAAA---GAACCG 236
consensus_4741#1 TATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTA 117
* *** * **** ** ** **** ** ** ** ***** * *
consensus_4741#0 GAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAA----T 292
consensus_4741#1 GGAATCTTATTTATTATATGAAGTGTAGTGACCTAA-CTTGGTTGCCTTAATCAAAGTGT 176
* * *** * ** * * * * *** ** * * ***** *
consensus_4741#0 TCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAA 352
consensus_4741#1 TTAGGAGAATTACTAATTGGTTGAAACACTTGGCTT--TAAGATATTTAG----TTTCAG 230
* * * ** * ** * * *** * ** * ****** *** *
consensus_4741#0 ATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAG 412
consensus_4741#1 ATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATA-TCGCTGTTTTTTT 289
*** * * ** * * * ** * * * ** *** *
consensus_4741#0 AATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAA 472
consensus_4741#1 CCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTAT-TGCCACTACAATTATTTG 348
* * ** ** ** *** ** * *** * ** *** * *
consensus_4741#0 ATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTC--ATCTGGTACTAGCGGAC 530
consensus_4741#1 GTATC-CTTTGGTATTTGTCTTGTT--GACTTCACTTTGTTCTACCAAATTCTAATCTTC 405
* ** ***** * *** * **** * * * ** ** * * * *** *
consensus_4741#0 TGT-TCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAA 589
consensus_4741#1 TGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTC 465
** * ** ** * * * * ** * ** * * * * **
consensus_4741#0 CCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNATACACAC 640
consensus_4741#1 CTTCAATAACGTCTTCAAACTCCAATCTTTCACAA---AATG--------- 504
* * * * ***** * **** * ** ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||