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Schistosoma mansoni
cluster # 4741 cluster # 4741       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4741#0 length = 640 sequences # 2  
consensus_4741#1 length = 504 sequences # 1  

consensusID : consensus_4741#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 640
fasta sequence
                              [TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACAAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNAT-ACACAC]

[+] EMBL CD160779             [TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACAAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNAT ACACA ]
[-] EMBL CD160759             [                gTTAAAATGAATAGGTAAGTGT AAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAANATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGANAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACGAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACCCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTTTGACCGAAATAAATGAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACAAATGCGATCAAAAAATAGTCTTGAATAATCGAAT AATAACACAC]


>consensus_4741#0 TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCG AACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGA CTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAA CACGAACTGACGCTTTATACAAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGT TGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAAT ATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTC TCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAGAATAATGT GTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAAATGTCACT TTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCA CGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACANATG CGATCAAAAAATAGTCTTGAATAATCGAATNNATACACAC



consensusID : consensus_4741#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [TGTCGGTGGGTAGGCATTATATAACGTGGGTAAGAACCGATGTTAATTGATTTTGAATATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTAGGAATCTTATTTATTATATGAAGTGTAGTGACCTAACTTGGTTGCCTTAATCAAAGTGTTTAGGAGAATTACTAATTGGTTGAAACACTTGGCTTTAAGATATTTAGTTTCAGATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATATCGCTGTTTTTTTCCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTATTGCCACTACAATTATTTGGTATCCTTTGGTATTTGTCTTGTTGACTTCACTTTGTTCTACCAAATTCTAATCTTCTGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTCCTTCAATAACGTCTTCAAACTCCAATCTTTCACAAAATG]

[+] EMBL CD088356             [TGTCGGTGGGTAGGCATTATATAACGTGGGTAAGAACCGATGTTAATTGATTTTGAATATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTAGGAATCTTATTTATTATATGAAGTGTAGTGACCTAACTTGGTTGCCTTAATCAAAGTGTTTAGGAGAATTACTAATTGGTTGAAACACTTGGCTTTAAGATATTTAGTTTCAGATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATATCGCTGTTTTTTTCCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTATTGCCACTACAATTATTTGGTATCCTTTGGTATTTGTCTTGTTGACTTCACTTTGTTCTACCAAATTCTAATCTTCTGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTCCTTCAATAACGTCTTCAAACTCCAATCTTTCACAAAATG]


>consensus_4741#1 TGTCGGTGGGTAGGCATTATATAACGTGGGTAAGAACCGATGTTAATTGATTTTGAATAT TTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTAGGA ATCTTATTTATTATATGAAGTGTAGTGACCTAACTTGGTTGCCTTAATCAAAGTGTTTAG GAGAATTACTAATTGGTTGAAACACTTGGCTTTAAGATATTTAGTTTCAGATTGAAGTAC CATTCTATCTCCTGGGAGTTGGATATCTGGATGATATCGCTGTTTTTTTCCCATTCCGTC TTCGCACACCTTTTCCTCCATTACCATTATTGCCACTACAATTATTTGGTATCCTTTGGT ATTTGTCTTGTTGACTTCACTTTGTTCTACCAAATTCTAATCTTCTGAATTCTTCATGTC TCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTCCTTCAATAACGTCTT CAAACTCCAATCTTTCACAAAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4741#0      TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCG 60
consensus_4741#1      ------------------------------------------------------------
                                                                                  

consensus_4741#0      AACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGA 120
consensus_4741#1      ---------------------------------------------------------TGT 3
                                                                               ** 

consensus_4741#0      CTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAA 180
consensus_4741#1      CGGTGGGTAGGCATTAT---ATAACGTGGGTAAGAACCGATGTT--AAT-TGATTTTGAA 57
                      *      ***    * *   **** *    * * **  ******  *** *  *******

consensus_4741#0      CACGAACTGACGCTTTA-TACAAGTTGTCGTCTCCATTCAAAGTTTTAAAA---GAACCG 236
consensus_4741#1      TATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTA 117
                       *    *** *  **** ** ** ****   **  ** **   ***** *    *     

consensus_4741#0      GAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAA----T 292
consensus_4741#1      GGAATCTTATTTATTATATGAAGTGTAGTGACCTAA-CTTGGTTGCCTTAATCAAAGTGT 176
                      *   * ***  *  ** *  *  * *  ***   **   *        * *****    *

consensus_4741#0      TCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAA 352
consensus_4741#1      TTAGGAGAATTACTAATTGGTTGAAACACTTGGCTT--TAAGATATTTAG----TTTCAG 230
                      * *  *  ** *  **    *  * *** *   **    *  ******      *** * 

consensus_4741#0      ATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAG 412
consensus_4741#1      ATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATA-TCGCTGTTTTTTT 289
                      ***      * *  **   * * *       **  * *    * ** ***    *     

consensus_4741#0      AATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAA 472
consensus_4741#1      CCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTAT-TGCCACTACAATTATTTG 348
                         * *  ** **      ** ***  **    *   ***  *   **   *** * *  

consensus_4741#0      ATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTC--ATCTGGTACTAGCGGAC 530
consensus_4741#1      GTATC-CTTTGGTATTTGTCTTGTT--GACTTCACTTTGTTCTACCAAATTCTAATCTTC 405
                       * ** ***** * ***  * ****  *   * * ** **   * *   * ***     *

consensus_4741#0      TGT-TCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAA 589
consensus_4741#1      TGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTC 465
                      **  *    ** **       *    * * *    ** *  **    * * * *  **  

consensus_4741#0      CCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNATACACAC 640
consensus_4741#1      CTTCAATAACGTCTTCAAACTCCAATCTTTCACAA---AATG--------- 504
                      *   *   * *   *****    * ****  * **   ***          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)