cluster # 4745

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Schistosoma mansoni
cluster # 4745 cluster # 4745 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4745#0 length = 757 sequences # 2

consensus_4745#1 length = 643 sequences # 1

consensusID : consensus_4745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [TTTGNAGCATCACCACCTGGAGGAACTCCATAACTAAATACANATTGACTGAATCTTGAAATGAATAAAACATTTTCACAACCCAAGGATTATCAGCTTTGACTAGAATATCACGTTCAGCTCTTACATGAGCGACTTGGTCCTTTTGTAGCATATCTGGTTTATGCAAAATCTTCATAGCATAAATATAGCCATTGTCTTGTTTTTGAACTAATCTTACTTCACCAAATGCTCCTTTACCAATTATTTTAAGAGGTAGAAAATCATCAACTGTGAGTCGTGCTCGTTTAAGTCGGAGAAATTCACTTTCTTTGAGAGCATGCTGTGTACGTTTGATTTGTTTTTGTTCTTCTGTTAAGCCTTCACTTTCCATCATTGACTCTAAAATCTTGTACCTATTTTGACGTTCTCGATATTGAACAATTAAATTGTCATAGTAATATTCCAATGTAACTTTTGCAACTTTTACTTTATCTAATGTATGACTACTAACATTCAATGAATTTATGGAGGGATTTGTACGATTTAATGATGTGGTAGAAGATGATGATGTCAAATCACCACCGCCACCGTTTATAACTTGACTATTTTTTGACATTGAAATAATATCAGGTTTCATTAATGTAGTAAGGGGATCGGTTGTTAAACTGAGATTACTATAAGGATGTGAACTTGCGGTTGACATGGTTTTTTGAAATTATTTTCACCGTTTCACTTTTAGCAAAATTACATTTAACCTCATTGATAGACAACGGTT]

[+] EMBL CD128882             [TTTGNAGCATCACCACCTGGAGGAACTCCATAACTAAATACANATTGACTGAATCTTGAAATGAATAAAACATTTTCACAACCCAAGGATTATCAGCTTTGACTAGAATATCACGTTCAGCTCTTACATGAGCGACTTGGTCCTTTTGTAGCATATCTGGTTTATGCAAAATCTTCATAGCATAAATATAGCCATTGTCTTGTTTTTGAACTAATCTTACTTCACCAAATGCTCCTTTACCAATTATTTTAAGAGGTAGAAAATCATCAACTGTGAGTCGTGCTCGTTTAAGTCGGAGAAATTCACTTTCTTTGAGAGCATGCTGTGTACGTTTGATTTGTTTTTGTTCTTCTGTTAAGCCTTCACTTTCCATCATTGACTCTAAAATCTTGTACCTATTTTGACGTTCTCGATATTGAACAATTAAAT                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AI975661             [                                                                                                                                                                                                                                                                TAGANAATCATCAACTGTGAGTCGTGCTCGTTTAAGTCGGAGAAATTCACTTTCTTTGAGAGCATGCTGTGTACGTTTGATTTGTTTTTGTTCTTCTGTTAAGCCTTCACTTTCCATCATTGACTCTAAAATCTTGTACCTATTTTGACGTTCTCGATATTGAACAATTAAATTGTCATAGTAATATTCCAATGTAACTTTTGCAACTTTTACTTTATCTAATGTATGACTACTAACATTCAATGAATTTATGGAGGGATTTGTACGATTTAATGATGTGGTAGAAGATGATGATGTCAAATCACCACCGCCACCGTTTATAACTTGACTATTTTTTGACATTGAAATAATATCAGGTTTCATTAATGTAGTAAGGGGATCGGTTGTTAAACTGAGATTACTATAAGGATGTGAACTTGCGGTTGACATGGTTTTTTGAAATTATTTTCACCGTTTCACTTTTAGCAAAATTACATTTAACCTCATTGATAGACAACGGTT]




>consensus_4745#0
TTTGNAGCATCACCACCTGGAGGAACTCCATAACTAAATACANATTGACTGAATCTTGAA
ATGAATAAAACATTTTCACAACCCAAGGATTATCAGCTTTGACTAGAATATCACGTTCAG
CTCTTACATGAGCGACTTGGTCCTTTTGTAGCATATCTGGTTTATGCAAAATCTTCATAG
CATAAATATAGCCATTGTCTTGTTTTTGAACTAATCTTACTTCACCAAATGCTCCTTTAC
CAATTATTTTAAGAGGTAGAAAATCATCAACTGTGAGTCGTGCTCGTTTAAGTCGGAGAA
ATTCACTTTCTTTGAGAGCATGCTGTGTACGTTTGATTTGTTTTTGTTCTTCTGTTAAGC
CTTCACTTTCCATCATTGACTCTAAAATCTTGTACCTATTTTGACGTTCTCGATATTGAA
CAATTAAATTGTCATAGTAATATTCCAATGTAACTTTTGCAACTTTTACTTTATCTAATG
TATGACTACTAACATTCAATGAATTTATGGAGGGATTTGTACGATTTAATGATGTGGTAG
AAGATGATGATGTCAAATCACCACCGCCACCGTTTATAACTTGACTATTTTTTGACATTG
AAATAATATCAGGTTTCATTAATGTAGTAAGGGGATCGGTTGTTAAACTGAGATTACTAT
AAGGATGTGAACTTGCGGTTGACATGGTTTTTTGAAATTATTTTCACCGTTTCACTTTTA
GCAAAATTACATTTAACCTCATTGATAGACAACGGTT

consensusID : consensus_4745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [TCCGCACAGAATGCAAACGTCNTANCAAAGACTGATCTTATTTTAATCAAGAGTATCAACATCAAGATAAACAGAACACATATTAATAACATCATTATGACCAAAAACGTTCGTGGCTAGCTAGACTCAGTGCATAACATACTGGTGTTTGAAGAGATAGATACTAGGGTTCAAGTCTCAACGTGAACATCAATACTCGGATGATATAGGTTTATGCAAATAATGGAACACCTATCCTATATTCTACCGCTAGCCATAAAATTTATCTGTTCTCTATAACCATTAGAATTCTTAAATTTTTAACAGTTTAAGAATACAAATAAGGATGTGTTTTATAAAAACAGAAAATATTGTCATACTCTGAAGAGGTGAATTCAACATTAATTAAATTAGAAACTAAACAAGATGAAATTAACAATCATTGTTCCAATATATACCGAATAATATCAATTATGGTTAATTGTGACAAGATTAATATTAAGCACTTACTTGGTCCTTTTGTAGCATATCTGCTTTATGCAAAATCTTCATAGCATAAATATAGCCATTGTCTTGTTTTTGAACTAATCTTACTTCACCAAATGCTCCTTTACCAATTATTTTAAGAGGTAGAAAATCATCAACTGTGAGTCGTGCTCGTTTA]

[-] EMBL CD091946             [TCCGCACAGAATGCAAACGTCNTANCAAAGACTGATCTTATTTTAATCAAGAGTATCAACATCAAGATAAACAGAACACATATTAATAACATCATTATGACCAAAAACGTTCGTGGCTAGCTAGACTCAGTGCATAACATACTGGTGTTTGAAGAGATAGATACTAGGGTTCAAGTCTCAACGTGAACATCAATACTCGGATGATATAGGTTTATGCAAATAATGGAACACCTATCCTATATTCTACCGCTAGCCATAAAATTTATCTGTTCTCTATAACCATTAGAATTCTTAAATTTTTAACAGTTTAAGAATACAAATAAGGATGTGTTTTATAAAAACAGAAAATATTGTCATACTCTGAAGAGGTGAATTCAACATTAATTAAATTAGAAACTAAACAAGATGAAATTAACAATCATTGTTCCAATATATACCGAATAATATCAATTATGGTTAATTGTGACAAGATTAATATTAAGCACTTACTTGGTCCTTTTGTAGCATATCTGCTTTATGCAAAATCTTCATAGCATAAATATAGCCATTGTCTTGTTTTTGAACTAATCTTACTTCACCAAATGCTCCTTTACCAATTATTTTAAGAGGTAGAAAATCATCAACTGTGAGTCGTGCTCGTTTA]




>consensus_4745#1
TCCGCACAGAATGCAAACGTCNTANCAAAGACTGATCTTATTTTAATCAAGAGTATCAAC
ATCAAGATAAACAGAACACATATTAATAACATCATTATGACCAAAAACGTTCGTGGCTAG
CTAGACTCAGTGCATAACATACTGGTGTTTGAAGAGATAGATACTAGGGTTCAAGTCTCA
ACGTGAACATCAATACTCGGATGATATAGGTTTATGCAAATAATGGAACACCTATCCTAT
ATTCTACCGCTAGCCATAAAATTTATCTGTTCTCTATAACCATTAGAATTCTTAAATTTT
TAACAGTTTAAGAATACAAATAAGGATGTGTTTTATAAAAACAGAAAATATTGTCATACT
CTGAAGAGGTGAATTCAACATTAATTAAATTAGAAACTAAACAAGATGAAATTAACAATC
ATTGTTCCAATATATACCGAATAATATCAATTATGGTTAATTGTGACAAGATTAATATTA
AGCACTTACTTGGTCCTTTTGTAGCATATCTGCTTTATGCAAAATCTTCATAGCATAAAT
ATAGCCATTGTCTTGTTTTTGAACTAATCTTACTTCACCAAATGCTCCTTTACCAATTAT
TTTAAGAGGTAGAAAATCATCAACTGTGAGTCGTGCTCGTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4745#0      TTTGNAGCATCACCACCTGGAGGAACTCCATAACTAAATACANATTGACTGAATCTTGAA 60
consensus_4745#1      ----------------------------------TCCGCACAGAATGCAAACGTCNTANC 26
                                                        *    *** * **      ** *   

consensus_4745#0      ATGAATAAAACATTTTCACAACCCAAGGATTATCAGCTTTGACTAGAATATCACGTTCAG 120
consensus_4745#1      AAAGACTGATC-TTATTTTAATC--AAGAGTATCAACATCAAGATAAACAGAACACATAT 83
                      *   *   * * ** *   ** *  * ** ***** * *  *    ** *  **    * 

consensus_4745#0      CTCTTACATGA--GCGACTTGGTCCTTTTGTAGCATATCTGGTTTA-TGCAAAATCTTCA 177
consensus_4745#1      TAATAACATCATTATGACCAAAAACGTTCGTGGCTAGCTAGACTCAGTGCATAACATAC- 142
                         * **** *    ***      * ** ** **      *  * * **** **  * * 

consensus_4745#0      TAGCATAAATATAGCCATTGTCTTGTTTTTGAA-CTAATCTTACTTCACCAAATGCTCCT 236
consensus_4745#1      TGGTGTTTGAAGAGATAGATACTAGGGTTCAAGTCTCAACGTGAA-CATCAA-TACTCGG 200
                      * *  *    * **  *    ** *  **  *  ** * * *    ** *** * ***  

consensus_4745#0      TTACCAATTATTTTAAGAGGTAGAAAATCATCAACTGTGAGTCGTGCTCGTTTAAGTCGG 296
consensus_4745#1      ATGATATAGGTTTATGCAAATAATGGAACACCTATCCTATATTCTAC-CGCT--AGCCAT 257
                       *   *    ***    *  **    * ** * *   *   *  * * ** *  ** *  

consensus_4745#0      AGAAATTCACTTTCTTTGAGAGCATGCTGTGTACGTTTGATTTGTTTTTGTTCTTCTGTT 356
consensus_4745#1      AAAATTTATCTGTTCTCTATAACCATTAGAATTC-TTAAATTTTTAACAGTTTAAGAATA 316
                      * ** **  ** *  *  * * *     *  * * **  **** *    ***      * 

consensus_4745#0      AAGCCTTCACTTTCCATCATTGACTCT-AAAATCTTGTACCTATTTTGACGTTCTCGATA 415
consensus_4745#1      CAAATAAGGATGTGTTTTATAAAAACAGAAAATATTGT-CATACTCTGAAGAGGTGAA-- 373
                       *        * *   * **  *  *  ***** **** * ** * *** *   *  *  

consensus_4745#0      TTGAACAATTAAATTGTCATAGTAATATTCCAATGTAACTTTTGCAACTTTTACTTTATC 475
consensus_4745#1      TTCAACATT--AATTAAATTAGAAACTAAACAAGATGAAATTAACAATCATTGTT----C 427
                      ** **** *  ****    *** **     ***  * *  **  ***   **  *    *

consensus_4745#0      TAATGTATGACTACTAACATTCAATGAATTTATGGAGGGATTTGTACGATTTAATGATGT 535
consensus_4745#1      CAATATATACCGAATAATATCAA------TTATGG---------------TTAATTGTG- 465
                       *** ***  * * *** **  *      ******               *****  ** 

consensus_4745#0      GGTAGAAGATGATGATGTCAAATCACCACCGCCACCGTTTATAACTTGACTATTTTTTGA 595
consensus_4745#1      ---ACAAGAT--TAATATTAAGCACTTACTTGGTCCTTTTGTAGCATATCTGCTTTATG- 519
                         * *****  * ** * **      **     ** *** ** * *  **  *** ** 

consensus_4745#0      CATTGAAATAATATCAGGTTTCATTAATGTAGTAAGGGGATCGGTTGTTAAACTGAGATT 655
consensus_4745#1      ---CAAAATCTTCATAG----CATAAATATAGCCATTGTCTTGTTT-TTGAACTAATCTT 571
                           ****  *   **    *** *** ***  *  *  * * ** ** **** *  **

consensus_4745#0      ACTATAAGGATGTGAACTTGCGGTTGACATGGTTTTTTGAAATTATTTTCACCGTTTCAC 715
consensus_4745#1      ACTTCAC-----CAAATGCTCCTTTACCA--ATTATTTTAAGAGGTAGAAAATCATCAAC 624
                      ***  *        **    *  **  **   ** *** **    *    *    *  **

consensus_4745#0      TTTTAGCAAAATTACATTTAACCTCATTGATAGACAACGGTT 757
consensus_4745#1      TGTGAGTCGTGCT-CGTTTA---------------------- 643
                      * * **      * * ****