cluster # 4757

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Schistosoma mansoni
cluster # 4757 cluster # 4757 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4757#0 length = 712 sequences # 2

consensus_4757#1 length = 520 sequences # 1

consensusID : consensus_4757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 712
fasta sequence

                              [GAACTGATTTACATTACTGATGGCACGTTGGTGTTTGTGGTTGACCATATAAGGGGCCTGCGTTCCGACTATGGAGATTGGTGTAGAGAGCACGAAGAACGAGTGCATGATTGTTTAGATGCTGTGGCAACAGGGTTGTCCCATGGTGTGGTTGAACACGTGGACCGTGAGTGTGAAACGATGACATGTCCAGAACACTTGGAGTCTACTGTTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAGACCTGTGTGATAAGCAGGCGTCTGAGATGGTGTTGATGCAAACAGCTCTTCGTGAGGCAGTCGAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTAGCGTCAGATCTGGAGGGTCGATTGTCTGCTTCTCGTGACGAGTGTTCTGCATTACGGGATGAAATGTGCCGGCTTGAGAAATCGATGGAAGAGCGTTGCAACACAGTGTTGGCGATAGCCAATCGAGACTGGGAGTCGCGCGTAAACGAAATTGTGAGTGAACGCGACACAGCCATGAAAGAGTTGTCGGAACTGCGTGGTAGATTGGATATGGCAGTATTGGGTGTGGGGTACC]

[+] EMBL CD115500             [GAACTGATTTACATTACTGATGGCACGTTGGTGTTTGTGGTTGACCATATAAGGGGCCTGCGTTCCGACTATGGAGATTGGTGTAGAGAGCACGAAGAACGAGTGCATGATTGTTTAGATGCTGTGGCAACAGGGTTGTCCCATGGTGTGGTTGAACACGTGGACCGTGAGTGTGAAACGATGACATGTCCAGAACACTTGGAGTCTACTGTTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAGACCTGTGTGATAAGCAGGCGTCTGAGATGGTGTTGATGCAAACAGCTCTTCGTGAGGCAGTCGAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTAGCG                                                                                                                                                                                                                                        ]
[-] EMBL CD068811             [                                                                                                                                                                                                                                  actgcCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAGACCTGTGTGATAAGCAGGTGTCTGAGATGGTGTTGATGCAAATAGCTCTTCGTGAGGCAGTCGAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTAGTGTCAGATCTGGAGGGTCGATTGTCTGCTTCTCGTGACGAGTGTTCTGCATTACGGGATGAAATGTGCCGGCTTGAGAAATCGATGGAAGAGCGTTGCAACACAGTGTTGGCGATAGCCAATCGAGACTGGGAGTCGCGCGTAAACGAAATTGTGAGTGAACGCGACACAGCCATGAAAGAGTTGTCGGAACTGCGTGGTAGATTGGATATGGCAGTATTGGGTGTGGGGTACC]




>consensus_4757#0
GAACTGATTTACATTACTGATGGCACGTTGGTGTTTGTGGTTGACCATATAAGGGGCCTG
CGTTCCGACTATGGAGATTGGTGTAGAGAGCACGAAGAACGAGTGCATGATTGTTTAGAT
GCTGTGGCAACAGGGTTGTCCCATGGTGTGGTTGAACACGTGGACCGTGAGTGTGAAACG
ATGACATGTCCAGAACACTTGGAGTCTACTGTTATGCTTGATAGCATTGTGCCACTACAG
GAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGATG
AGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAGACCTG
TGTGATAAGCAGGCGTCTGAGATGGTGTTGATGCAAACAGCTCTTCGTGAGGCAGTCGAA
CAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTAGCG
TCAGATCTGGAGGGTCGATTGTCTGCTTCTCGTGACGAGTGTTCTGCATTACGGGATGAA
ATGTGCCGGCTTGAGAAATCGATGGAAGAGCGTTGCAACACAGTGTTGGCGATAGCCAAT
CGAGACTGGGAGTCGCGCGTAAACGAAATTGTGAGTGAACGCGACACAGCCATGAAAGAG
TTGTCGGAACTGCGTGGTAGATTGGATATGGCAGTATTGGGTGTGGGGTACC

consensusID : consensus_4757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [ATCATGCACTCGTTCTTCGTGCTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAAAATGGCGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACA]

[+] EMBL CD150387             [ATCATGCACTCGTTCTTCGTGCTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAAAATGGCGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACA]




>consensus_4757#1
ATCATGCACTCGTTCTTCGTGCTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCT
TATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGTTATGAACAGATAGTGAAGC
TGTCTAAATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTG
TGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGA
ATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATG
TGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGA
ACACTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACC
TAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAAAATGGCGCGACGTTGA
CGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4757#0      GAACTGATTTACATTACTGATGGCACGTTGGTGTTTGTGGTTGACCATATAAGGGGCCTG 60
consensus_4757#1      -------------------------------------------ATCATGCACTCGTTCTT 17
                                                                 * ***  *   *  ** 

consensus_4757#0      CGTTCCGACTATGGAGATTGGTGTAGAGAGCACGAAGAACGAGTGCATGATTGTTTAGAT 120
consensus_4757#1      CGTGCTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAA 77
                      *** *   ***     **     ***   * *** **  *   *  *** *     * * 

consensus_4757#0      GCTGTGGCAACAGGGTTGTC-CCATGGTGTGGTTGAACACGTGGACCGTGAGTGTGAAAC 179
consensus_4757#1      AC---ACCAACAGTGCTTTCGTCTTGTTATGAACAGATA-GTGAAGC---TGTCTAAATC 130
                       *     ****** * * **  * ** * **     * * *** * *    ** * ** *

consensus_4757#0      GATGACATGTCCAGAACACTTGGAGTCTACTGTTATGCTTGATAGCATTGTGCCACTACA 239
consensus_4757#1      G-------GTTGAGGAGAGTGATGCTTCGTTG--ATGGATGTTCGGCGTTTGTTGACTGT 181
                      *       **  ** * * *     *    **  ***  ** * *   * **        

consensus_4757#0      GGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGAT 299
consensus_4757#1      GAAGGAGAGTGAAGTTGCG--GAT-CTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGT 238
                      * **   * ******* **  *** * ***** * *  *  *  *** *  * * **  *

consensus_4757#0      GAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAG-ACC 358
consensus_4757#1      GAATGAGTTGAGGGAGACTG--TGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCC 296
                      **      ** * ** **     *   ** *   ** * * * ** *  *   * *  **

consensus_4757#0      TGTGTG-ATAAGCAGGCGTCTGAGATGGTGTTGATGCAAACAGCTCTTCGTGAGGCAGTC 417
consensus_4757#1      AATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGAT-GTACGTGGAGAGTC-GTG 354
                        **** **  *  ** *    **   * * **  *   *  *  * * * *** * ** 

consensus_4757#0      GAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTA 477
consensus_4757#1      GACCGAACA-CTGCTGCTGTGGAGGAG--GAGTGTGTGCAGACG-GAGATTGAGGACGAC 410
                      ** *   *  *  *****    ****   *   *  *  ****  ****  *    **  

consensus_4757#0      GCGTCAGATCTGGAGGGTCGATTGTCTGCTTCTCGTGACGAGTGTTCTGCATTACGGGAT 537
consensus_4757#1      GTTTATGACCT--AGTGTCG--TCTCTGCAGGTCGAGGTTGCCCATCTGCGT---GAGGA 463
                      *  *  ** **  ** ****  * *****   *** *        ***** *   * *  

consensus_4757#0      GAAATGTGCCGGCTTGAGAAATCGATGGAAGAGCGTTGCAACACAGTGTTGGCGATAGCC 597
consensus_4757#1      AAATGGCGCGACGTTGACGGCTCTG-----GAGCGTTCACAGCTTGAGTTGATGATGAAA 518
                       **  * **    ****    **       *******   *    * ****  ***    

consensus_4757#0      AATCGAGACTGGGAGTCGCGCGTAAACGAAATTGTGAGTGAACGCGACACAGCCATGAAA 657
consensus_4757#1      CA---------------------------------------------------------- 520
                       *                                                          

consensus_4757#0      GAGTTGTCGGAACTGCGTGGTAGATTGGATATGGCAGTATTGGGTGTGGGGTACC 712
consensus_4757#1      -------------------------------------------------------