cluster # 4758

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Schistosoma mansoni
cluster # 4758 cluster # 4758 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4758#0 length = 399 sequences # 2

consensus_4758#1 length = 339 sequences # 1

consensusID : consensus_4758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence

                              [AAGGTATTATGTGAAATATATTTACTCTGCAAATTTAACCAGTATTTCAGAATTATGAACCAACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTGTGGGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTTGAGTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAATTTGCAAACTTGTTCACCTGCATAGACTTAATTATTACAAAGATCGGTGCCTTCCAATTACTCGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGCTTCCTAGATTGCTCAATGCCAATTAATTAGATGTTTCATATTCAATGACTTCA]

[+] EMBL CD149132             [AAGGTATTATGTGAAATATATTTACTCTGCAAATTTAACCAGTATTTCAGAATTATGAACCAACGAGACAAACAAGTAGGTCATTATCTCCAACGAT                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD149380             [  GGTATTATGTGAAGTATATTTACTCTGCAGATTTAACCAGTATTTCAGAATTATGAACCAACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTGTGGGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTTGAGTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAATTTGCAAACTTGTTCACCTGCATAGACTTAATTATTACAAAGATCGGTGCCTTCCAATTACTCGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGCTTCCTAGATTGCTCAATGCCAATTAATTAGATGTTTCATATTCAATGACTTCA]




>consensus_4758#0
AAGGTATTATGTGAAATATATTTACTCTGCAAATTTAACCAGTATTTCAGAATTATGAAC
CAACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTG
TGGGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTT
GAGTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAAT
TTGCAAACTTGTTCACCTGCATAGACTTAATTATTACAAAGATCGGTGCCTTCCAATTAC
TCGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGCTTCCTAGATTGCTC
AATGCCAATTAATTAGATGTTTCATATTCAATGACTTCA

consensusID : consensus_4758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [GGTATTATGTGAAATATATTTACTCTGCAGATTTAACCAGTATTTCAGAATTATGAACCAACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTGTGGGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTTGAGTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAATTTGCAAACTTGTTCACTTGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGCTTCCTAGATTGCTCAATGCCAATTTTTGTATACATCATC]

[+] EMBL CD149349             [GGTATTATGTGAAATATATTTACTCTGCAGATTTAACCAGTATTTCAGAATTATGAACCAACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTGTGGGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTTGAGTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAATTTGCAAACTTGTTCACTTGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGCTTCCTAGATTGCTCAATGCCAATTTTTGTATACATCATC]




>consensus_4758#1
GGTATTATGTGAAATATATTTACTCTGCAGATTTAACCAGTATTTCAGAATTATGAACCA
ACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTGTG
GGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTTGA
GTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAATTT
GCAAACTTGTTCACTTGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGC
TTCCTAGATTGCTCAATGCCAATTTTTGTATACATCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4758#0      AAGGTATTATGTGAAATATATTTACTCTGCAAATTTAACCAGTATTTCAGAATTATGAAC 60
consensus_4758#1      --GGTATTATGTGAAATATATTTACTCTGCAGATTTAACCAGTATTTCAGAATTATGAAC 58
                        ***************************** ****************************

consensus_4758#0      CAACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTG 120
consensus_4758#1      CAACGAGACAAACAAGTAGGTCATTATCTCCAACGATTCTGGATGCCTCGTAAACATTTG 118
                      ************************************************************

consensus_4758#0      TGGGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTT 180
consensus_4758#1      TGGGCCGCAGCTTTTACCGGAACTGTTTTGACGCTGGGTAACAACACCAACAATCGTGTT 178
                      ************************************************************

consensus_4758#0      GAGTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAAT 240
consensus_4758#1      GAGTCATTAAATCGTCAATTTGTAAATTTTTCCTCCACATAATCTTCCATATTCAGAAAT 238
                      ************************************************************

consensus_4758#0      TTGCAAACTTGTTCACCTGCATAGACTTAATTATTACAAAGATCGGTGCCTTCCAATTAC 300
consensus_4758#1      TTGCAAACTTGTTCA--------------------------------------------C 254
                      ***************                                            *

consensus_4758#0      TCGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGCTTCCTAGATTGCTC 360
consensus_4758#1      TTGACAGAAGTCATAAGTTTTATAACAGAAAAAACGTATGGATAGCTTCCTAGATTGCTC 314
                      * **********************************************************

consensus_4758#0      AATGCCAATTAATTAGATGTTTCATATTCAATGACTTCA 399
consensus_4758#1      AATGCCAATTT-TTGTATACATCATC------------- 339
                      **********  **  **   ****