These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [TTATCTCAAACTGCTAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATCACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGCTTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTCAAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCGCGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCCCCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACAAATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG] [+] EMBL CD131394 [TTATCTCAAACTGCTAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAA ] [+] EMBL BF936582 [ AGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATCACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGCTTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTCAAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCGCGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCCCCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACAAATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG] consensusID : consensus_4765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTCTGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATCAAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAATAGCTACCCAGCCAAATTCATTGAAAAAAAGCGTGACACCGAAATTACAAACTTAAA] [+] EMBL CD184853 [CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTCTGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATCAAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAATAGCTACCCAGCCAAATTCATTGAAAAAAAGCGTGACACCGAAATTACAAACTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4765#0 ------------------------------------------------------------ consensus_4765#1 CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTC 60 consensus_4765#0 ------------------------------------------------------------ consensus_4765#1 TGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATC 120 consensus_4765#0 ----------------------------------TTATCTCAAACTGCTAGCTATATAGC 26 consensus_4765#1 AAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGC 180 ************** *********** consensus_4765#0 TGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCC 86 consensus_4765#1 TGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCC 240 ************************************************************ consensus_4765#0 TAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAG 146 consensus_4765#1 TAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAG 300 ************************************************************ consensus_4765#0 CTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAG 206 consensus_4765#1 CTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAG 360 ************************************************************ consensus_4765#0 TCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGAT 266 consensus_4765#1 TCAGAAAAATGCAGCTGAATCTATTATCAGAAA--TAGCTACCCAGCCAAATTCATTGAA 418 ********************************* * * * * ** * ** consensus_4765#0 CCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATC 326 consensus_4765#1 AAAAAGCGTGACA--CCGAAATTACAAA-----CTTAAA--------------------- 450 * ** ** * ** * *** ** ** consensus_4765#0 ACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGC 386 consensus_4765#1 ------------------------------------------------------------ consensus_4765#0 TTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTC 446 consensus_4765#1 ------------------------------------------------------------ consensus_4765#0 AAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCG 506 consensus_4765#1 ------------------------------------------------------------ consensus_4765#0 CGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCC 566 consensus_4765#1 ------------------------------------------------------------ consensus_4765#0 CCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACA 626 consensus_4765#1 ------------------------------------------------------------ consensus_4765#0 AATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG 679 consensus_4765#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||