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Schistosoma mansoni
cluster # 4765 cluster # 4765       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4765#0 length = 679 sequences # 2  
consensus_4765#1 length = 450 sequences # 1  

consensusID : consensus_4765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence
                              [TTATCTCAAACTGCTAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATCACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGCTTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTCAAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCGCGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCCCCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACAAATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG]

[+] EMBL CD131394             [TTATCTCAAACTGCTAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAA                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BF936582             [                       AGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATCACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGCTTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTCAAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCGCGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCCCCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACAAATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG]


>consensus_4765#0 TTATCTCAAACTGCTAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTG ATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGG AGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAAT GATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAA CCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTC TCCAAAGAAAGACGCGTGCCATCATCACGTATAGGACGAGTAGCTGGTTTTGGAAATTTG GCATTAAGTCTTAGTGTTGGAGCAGCTTCTGAGTGGGCTAAACAGAAAGTTGGATATCCT GTCTCTGGCGCTTCAGCTCCACCTTCAAATGTGTTTTTATCTGAGGCTAATCTTGAAAAG GTCGTAGACACGTTGTGTCGTATGCGCGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGT ATCCAAGATGAGAGTTTTGTTAGTCCCCAGGTCCAAAGAATATTTGAACGTGTAAGACAG GCGGCAGATTTCATGCCAGCTAAACAAATGAAAAAAGTCCTAACATCAGAACTAGGCGAA GATTGGACTGAACATGGTG



consensusID : consensus_4765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence
                              [CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTCTGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATCAAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAATAGCTACCCAGCCAAATTCATTGAAAAAAAGCGTGACACCGAAATTACAAACTTAAA]

[+] EMBL CD184853             [CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTCTGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATCAAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAATAGCTACCCAGCCAAATTCATTGAAAAAAAGCGTGACACCGAAATTACAAACTTAAA]


>consensus_4765#1 CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTC TGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATC AAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGC TGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCC TAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAG CTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAG TCAGAAAAATGCAGCTGAATCTATTATCAGAAATAGCTACCCAGCCAAATTCATTGAAAA AAAGCGTGACACCGAAATTACAAACTTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4765#0      ------------------------------------------------------------
consensus_4765#1      CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTC 60
                                                                                  

consensus_4765#0      ------------------------------------------------------------
consensus_4765#1      TGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATC 120
                                                                                  

consensus_4765#0      ----------------------------------TTATCTCAAACTGCTAGCTATATAGC 26
consensus_4765#1      AAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGC 180
                                                        ************** ***********

consensus_4765#0      TGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCC 86
consensus_4765#1      TGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCC 240
                      ************************************************************

consensus_4765#0      TAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAG 146
consensus_4765#1      TAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAG 300
                      ************************************************************

consensus_4765#0      CTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAG 206
consensus_4765#1      CTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAG 360
                      ************************************************************

consensus_4765#0      TCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGAT 266
consensus_4765#1      TCAGAAAAATGCAGCTGAATCTATTATCAGAAA--TAGCTACCCAGCCAAATTCATTGAA 418
                      *********************************   *  *   *  *  ** *    ** 

consensus_4765#0      CCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATC 326
consensus_4765#1      AAAAAGCGTGACA--CCGAAATTACAAA-----CTTAAA--------------------- 450
                               * **  ** * ** * ***     **  **                     

consensus_4765#0      ACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGC 386
consensus_4765#1      ------------------------------------------------------------
                                                                                  

consensus_4765#0      TTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTC 446
consensus_4765#1      ------------------------------------------------------------
                                                                                  

consensus_4765#0      AAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCG 506
consensus_4765#1      ------------------------------------------------------------
                                                                                  

consensus_4765#0      CGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCC 566
consensus_4765#1      ------------------------------------------------------------
                                                                                  

consensus_4765#0      CCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACA 626
consensus_4765#1      ------------------------------------------------------------
                                                                                  

consensus_4765#0      AATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG 679
consensus_4765#1      -----------------------------------------------------
                                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)