These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 751 fasta sequence [TTTACTGATATCCAATTTGTACGGCTGCTGTTGATCAGGAACAAGCATAAGGTGATCTTCTGCAGTTTTTGGGATATCCTCTGATTGGCCATCCTCAGCCACAATATAACGCATGCGTCTGATTTGTGTATCCTCTGGGATTTTATCTCCAGATGGTTCGGAACTGATTTTGGTTTTCTTCTCGACATAATCGTTTTGCTTTGACATTTCTCTTGCTTCTAATAAAAATGTGGCAACCACTGAATCAAGAAATGGTGTGCTAATGCTACTGTCTCTGATAACCCAAATAATTTGACAACCAGAGACTTCATGTGCAACCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGACGGGTGCCCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACAGTATGACTGGGAGGATCTAGTTNTATCATTGTATCACAGATTACGGTCAATGTATCAGGCCATGTTTCTGACCATGAACTACCAGATTTCTNCTCAAACATC-AAAGTTNCGATCATATTGCTTATTCGACGTAGATTGACTGTAGTTTTCACAGTTTTAGAAGCCGATATCAGTGCTACACGTTTAGATGCATAGTTTAAACGATCTGATGATGACTGGAGAGCCCCA] [+] EMBL CD146857 [TTTACTGATATCCAATTTGTACGGCTGCTGTTGATCAGGAACAAGCATAAGGTGATCTTCTGCAGTTTTTGGGATATCCTCTGATTGGCCATCCTCAGCCACAATATAACGCATGCGTCTGATTTGTGTATCCTCTGGGATTTTATCTCCAGATGGTTCGGAACTGATTTTGGTTTTCTTCTCGACATAATCGTTTTGCTTTGACATTTCTCTTGCTTCTAATAAAAATGTGGCAACCACTGAATCAAGAAATGGTGTGCTAATGCTACTGTCTCTGATAACCCAAATAATTTGACAACCAGAGACTTCATGTGCAACCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGACGGGTGCCCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACAGTATGACTGGGAGGATCTAGTTNTATCATTGTATCACAGATTACGGTCAATGTATCAGGCCATGTTTCTGACCATGAACTACCAGATTTCTNCTCAAACATC AAAGTTNCGATC ] [-] EMBL CD154987 [ CCAGAGACTTCATGTGCAATCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGACGGGTGCCCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACAGTATGACTGGAAGGATCTAGTTTTATCATTGTATCACAGATTACGGTCAATGTATCAGGCCATGTTTCTGACCATGAACTACCAGATTTCTCCTC AACATCAAAAGTTTCGATCATATTGCTTATTCGACGTAGATTGACTGTAGTTTTCACAGTTTTAGAAGCCGATATCAGTGCTACACGTTTAGATGCATAGTTTAAACGATCTGATGATGACTGGAGAGCCCCA] consensusID : consensus_4767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [TATAATTTATATCCCTTTGACAACTTTTATCCATATGTTGATGTTTACTCTGAGACTCGACCAGTTGGCTAATTTCTGAAATCCATTTAGTTGAGACCTGGGGAAGTACTCCGTCAAATAAATTATCAGTTTAGTTATCCCGATCAAATTCAATAATCGTATCAATTTATCTAACAGCTACCACAAAAACTACTTCCTTATTTTGTTGACTGTAACAGATGATGATCTTGCCATGATAATTGAAATGAAAATTAAACCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCAC] [-] EMBL CD084321 [TATAATTTATATCCCTTTGACAACTTTTATCCATATGTTGATGTTTACTCTGAGACTCGACCAGTTGGCTAATTTCTGAAATCCATTTAGTTGAGACCTGGGGAAGTACTCCGTCAAATAAATTATCAGTTTAGTTATCCCGATCAAATTCAATAATCGTATCAATTTATCTAACAGCTACCACAAAAACTACTTCCTTATTTTGTTGACTGTAACAGATGATGATCTTGCCATGATAATTGAAATGAAAATTAAACCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4767#0 TTTACTGATATCCAATTTGTACGGCTGCTGTTGATCAGGAACAAGCATAAGGTGATCTTC 60 consensus_4767#1 ------------------------------------------------------------ consensus_4767#0 TGCAGTTTTTGGGATATCCTCTGATTGGCCATCCTCAGCCACAATATAACGCATGCGTCT 120 consensus_4767#1 ---------------------------------------------------------TAT 3 * * consensus_4767#0 GATTTGTGTATCCTCTGGGATTTTATCTCCAGATGGTTCGGAACTGATTTTGGTTTTCTT 180 consensus_4767#1 AATTTATAT-CCCTTTGACAACTTTTATCCATATG--TTGATGTTTACTCTGAGA----- 55 **** * * *** ** * ** * **** *** * * * * * ** consensus_4767#0 CTCGACATAATCGTTTTGCTTTGACATTTCTCTTGCTTCTAATAAAAATGTGGCAACCAC 240 consensus_4767#1 CTCGAC-CAGTTGGCTAATTTCTGAAATCCATTTAGTTGAGACCTGGGGAAGTACTCCGT 114 ****** * * * * ** * * * ** ** * * ** consensus_4767#0 TGAATCAAGAAATGGTGTGCTAATGCT-ACTGTCTCTGATAACCCAAATAATTTGACAAC 299 consensus_4767#1 CAAATAAATTATCAGTTTAGTTATCCCGATCAAATTCAATAATCGTATCAATTTATCTAA 174 *** ** * ** * * ** * * * **** * * ***** * * consensus_4767#0 CAGAGACTTCATGTGCAACCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGAC 359 consensus_4767#1 CAGCTACCACAAAAACTACTTCCTTATTTTGTTGACTGTAACAGATGATGATCTTGCCAT 234 *** ** ** * ** *** * * * ** * * * * * * * * consensus_4767#0 GGGTGC----------------CCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTA 403 consensus_4767#1 GATAATTGAAATGAAAATTAAACCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTA 294 * ************************************** consensus_4767#0 TCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTT 463 consensus_4767#1 TCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTT 354 ************************************************************ consensus_4767#0 GTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACA 523 consensus_4767#1 GTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCAC----------------- 397 ******************************************* consensus_4767#0 GTATGACTGGGAGGATCTAGTTNTATCATTGTATCACAGATTACGGTCAATGTATCAGGC 583 consensus_4767#1 ------------------------------------------------------------ consensus_4767#0 CATGTTTCTGACCATGAACTACCAGATTTCTNCTCAAACATCAAAGTTNCGATCATATTG 643 consensus_4767#1 ------------------------------------------------------------ consensus_4767#0 CTTATTCGACGTAGATTGACTGTAGTTTTCACAGTTTTAGAAGCCGATATCAGTGCTACA 703 consensus_4767#1 ------------------------------------------------------------ consensus_4767#0 CGTTTAGATGCATAGTTTAAACGATCTGATGATGACTGGAGAGCCCCA 751 consensus_4767#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||