cluster # 4769

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Schistosoma mansoni
cluster # 4769 cluster # 4769 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4769#0 length = 641 sequences # 2

consensus_4769#1 length = 154 sequences # 1

consensusID : consensus_4769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 641
fasta sequence

                              [AGTTTCCAGTATATTTACAAAAGGACGAAGAAATTCTTTTTGGAAGTGAAAATTAGGCAATTCACCTTTTTCTATTAATTTTACTGATAATTGACGTAAAGAATCAACAACAAATTCAGCAACATCTTCATCAACTGATCGACCAGCTGTAGTAAAATGACTACCAATATGTTCCCAAATACGTGACCATTGTAATCGAATACGACCCATATTATAATATGAAATTTCAACAACTTTCTGAAGTGAGAATGTTCTTGCTTGTGGAAGATTTAATTCCTCCTGACTAACTTGACATAAAGCTTTTACAAATTCTACAATAGCATCACCATTTAAACGAATTGATCCTGTGAAAATTT-TATCAACAGCAACAACCACACTCTGTGATCCAGTCTCTCCCATTACTTCTTGTAAAACAGCAGCTTTTTTAGAGTCGACAATAGAAGCCGCTAAACTACCTGGTGCTACAGGTTCATTTAAATTAGAACTTACAAAATGATTAGATGTAACTGTTGGACTAGATGCTATTAAATTATTTGATTTAATAGAACTATTTTCTGTTGTTAATGAAGTAACCGTAGATAATTCATTTGTATTTTGGTTATAAGAATTGTTATATGAATTGAAATGTGTTGAACGGTTAC]

[+] EMBL CD124737             [AGTTTCCAGTATATTTACAAAAGGACGAAGAAATTCTTTTTGGAAGTGAAAATTAGGCAATTCACCTTTTTCTATTAATTTTACTGATAATTGACGTAAAGAATCAACAACAAATTCAGCAACATCTTCATCAACTGATCGACCAGCTGTAGTAAAATGACTACCAATATGTTCCCAAATACGTGACCATTGTAATCGAATACGACCCATATTATAATATGAAATTTCAACAACTTTCTGAAGTGAGAATGTTCTTGCTTGTGGAAGATTTAATTCCTCCTGACTAACTTGACATAAAGCTTTTACAAATTCTACAATAGCATCACCATTTAAACGAATTGATCCTGTGAAAATTT TATCAACAGCAACAACCACACTCTGTGATCCAGTCTCTCCCATTACTTCTTGTAAAACAGCAGCTTTTTTAGAGTCGACAATAGAAGCCGCTAAACTACCTGGTGCTACAGGTTCATTTAAATTAGAACTTACAAAATGATTAGATGTAACTGTTGGACTAGATGCTATTAAATTATTTGATTTAATAGAACTATTTTCTGTTGTTAATGAAGTAACCGTAGATAATTCATTTGTATTTTGGTTATAAGAATTGTTATATGAATTGAAATGTGTTGAACGGTTAC]
[+] EMBL CD124800             [                              AAATTCTTTTTGGAAGTGAAAATTAGGCAATTCACCTTTTTCTATTAATTTTACTGATAATTGACGTAAAGAATCACCAACAAATTCAGCAACATCTTCATCAACTGATCGACCAGCTGTAGTAAAATGACTACCAATATGTTCCCAAATACGTGACCATTGTAATCGAATACGACCCATATTATAATATGAAATTTCAACAACTTTCTGAAGTGAGAATGTTCTTGCTTGTGGAAGATTTAATTCCTCCTGACTAACTTGACATAAAGCTTTTACAAATTCTACAATAGCATCACCATTTAAACGAATTGACCCTGTGAAAATTTATA CNACAGCAACAACCACACTCTGTGATCCAGTCTCTCCCATTACTTCTTGTAAAACAGCAGCTTTTTTAGAGTCGACAATAGAAGCCGCTAAACTACCTGGTGCTACAGGTTCATTTAAATTAGAACTTACCAAATGATTAGATGTAACTGTTGGACTAGATGCTATTAAATTATT                                                                                                           ]




>consensus_4769#0
AGTTTCCAGTATATTTACAAAAGGACGAAGAAATTCTTTTTGGAAGTGAAAATTAGGCAA
TTCACCTTTTTCTATTAATTTTACTGATAATTGACGTAAAGAATCAACAACAAATTCAGC
AACATCTTCATCAACTGATCGACCAGCTGTAGTAAAATGACTACCAATATGTTCCCAAAT
ACGTGACCATTGTAATCGAATACGACCCATATTATAATATGAAATTTCAACAACTTTCTG
AAGTGAGAATGTTCTTGCTTGTGGAAGATTTAATTCCTCCTGACTAACTTGACATAAAGC
TTTTACAAATTCTACAATAGCATCACCATTTAAACGAATTGATCCTGTGAAAATTTTATC
AACAGCAACAACCACACTCTGTGATCCAGTCTCTCCCATTACTTCTTGTAAAACAGCAGC
TTTTTTAGAGTCGACAATAGAAGCCGCTAAACTACCTGGTGCTACAGGTTCATTTAAATT
AGAACTTACAAAATGATTAGATGTAACTGTTGGACTAGATGCTATTAAATTATTTGATTT
AATAGAACTATTTTCTGTTGTTAATGAAGTAACCGTAGATAATTCATTTGTATTTTGGTT
ATAAGAATTGTTATATGAATTGAAATGTGTTGAACGGTTAC

consensusID : consensus_4769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [AAGATGTTGCTGAATTTGTTGTTGATTCTTTAGGTCAATTATCAGTAAAATTAATAGAAAAVGGTGAVBBGCCTAATTBKSACTBCCAAAAAGAATTTSBTCGTCCTTTTGTTTGAAGGCTGGKAAAAAAAAGGGACGAATAATGTCABNYATT]

[+] EMBL SMRAP054             [AAGATGTTGCTGAATTTGTTGTTGATTCTTTAGGTCAATTATCAGTAAAATTAATAGAAAAVGGTGAVBBGCCTAATTBKSACTBCCAAAAAGAATTTSBTCGTCCTTTTGTTTGAAGGCTGGKAAAAAAAAGGGACGAATAATGTCABNYATT]




>consensus_4769#1
AAGATGTTGCTGAATTTGTTGTTGATTCTTTAGGTCAATTATCAGTAAAATTAATAGAAA
AVGGTGAVBBGCCTAATTBKSACTBCCAAAAAGAATTTSBTCGTCCTTTTGTTTGAAGGC
TGGKAAAAAAAAGGGACGAATAATGTCABNYATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4769#0      AGTTTCCAGTATATTTACAAAAGGACGAAGAAATTCTTTTTGGAAGTGAAAATTAGGCAA 60
consensus_4769#1      ------------------------------------------------------------
                                                                                  

consensus_4769#0      TTCACCTTTTTCTATTAATTTTACTGATAATTGACGTAAAGAATCAACAACAAATTCAGC 120
consensus_4769#1      ------------------------------------------------------------
                                                                                  

consensus_4769#0      AACATCTTCATCAACTGATCGACCAGCTGTAGTAAAATGACTACCAATATGTTCCCAAAT 180
consensus_4769#1      ------------------------------------------------------------
                                                                                  

consensus_4769#0      ACGTGACCATTGTAATCGAATACGACCCATATTATAATATGAAATTTCAACAACTTTCTG 240
consensus_4769#1      ------------------------------------------------------------
                                                                                  

consensus_4769#0      AAGTGAGAATGTTCTTGCTTGTGGAAGATTTAATTCCTCCTGACTAACTTGACATAAAGC 300
consensus_4769#1      ------------------------------------------------------------
                                                                                  

consensus_4769#0      TTTTACAAATTCTACAATAGCATCACCATTTAAACGAATTGATCCTGTGAAAATTTTATC 360
consensus_4769#1      ------------------------------------------------------------
                                                                                  

consensus_4769#0      AACAGCAACAACCACACTCTGTGATCCAGTCTCTCCCATTACTTCTTGTAAAACAGCAGC 420
consensus_4769#1      ------------------------------------------------------------
                                                                                  

consensus_4769#0      TTTTTTAGAGTCGACAATAGAAGCCGCTAAACTACCTGGTGCTACAGGTTCATTTAAATT 480
consensus_4769#1      -----------------------------------------------------------A 1
                                                                                  

consensus_4769#0      AGAACTTACAAAATGATTAGATGTAACTGTTGGACTAGATGCTATTAAATTATTTGATTT 540
consensus_4769#1      AGATGTTGCTGAATTTGTTGTTGATTCTTTAGGTCAATTATCAGTAAAATTAATAGAAAA 61
                      ***  ** *  ***   * * **   ** * ** * *    *  * ****** * **   

consensus_4769#0      AATAGAACTATTTTCTGTTGTTAATGAAGTAACCGTAGATAATTCATTTGTATTTTGGTT 600
consensus_4769#1      VGGTGAVBBGCCT--AATTBKSACTB------CCAAAAAGAATTTSBTCGTCCTTTTGTT 113
                          **      *    **   * *       **  * * ****   * **  *** ***

consensus_4769#0      ATAAGAATTGTTATATGAATTGAAATGTGTTGAACGGTTAC- 641
consensus_4769#1      TGAAGGCTGGKAAAAAAAAGGGACGAATAATGT-CABNYATT 154
                        ***  * *  * *  **  **    *  **  *    *