cluster # 4781

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Schistosoma mansoni
cluster # 4781 cluster # 4781 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4781#0 length = 447 sequences # 1

consensus_4781#1 length = 443 sequences # 2

consensusID : consensus_4781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [GTCGAGCGGTGCGGCAGGGGCTCCTGTTCTGGCACACTCGATGTATAGTAATTACACGATGAACGGAGTAAAGCTTATACAGTTGGACTGACTTCAAAAATGGCTCGACTCAGTGAGTACCGGTGAGCACAGCTGTATTACTTGACCACAGCCGGGGCGATCTGTTAACACTGTGTCGGACACGAACGGAGAATGCGCATTATTTGGTGCACACGCATCTGATGCAATATACGGTCTGTCTTAGATCGACTCCGGCGGATCGTTTATCGAGTGCGCAGACCGCATTTTAGCGCGTGCCCTAGAAGAAATGATGAACGATGTGCTTGACTATGTTAAGACTATATGATGCGGACCATTGAAAAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGGAACTGTCGTTCGTATTTTTGCGTTTTCAC]

[+] EMBL CD162590             [GTCGAGCGGTGCGGCAGGGGCTCCTGTTCTGGCACACTCGATGTATAGTAATTACACGATGAACGGAGTAAAGCTTATACAGTTGGACTGACTTCAAAAATGGCTCGACTCAGTGAGTACCGGTGAGCACAGCTGTATTACTTGACCACAGCCGGGGCGATCTGTTAACACTGTGTCGGACACGAACGGAGAATGCGCATTATTTGGTGCACACGCATCTGATGCAATATACGGTCTGTCTTAGATCGACTCCGGCGGATCGTTTATCGAGTGCGCAGACCGCATTTTAGCGCGTGCCCTAGAAGAAATGATGAACGATGTGCTTGACTATGTTAAGACTATATGATGCGGACCATTGAAAAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGGAACTGTCGTTCGTATTTTTGCGTTTTCAC]




>consensus_4781#0
GTCGAGCGGTGCGGCAGGGGCTCCTGTTCTGGCACACTCGATGTATAGTAATTACACGAT
GAACGGAGTAAAGCTTATACAGTTGGACTGACTTCAAAAATGGCTCGACTCAGTGAGTAC
CGGTGAGCACAGCTGTATTACTTGACCACAGCCGGGGCGATCTGTTAACACTGTGTCGGA
CACGAACGGAGAATGCGCATTATTTGGTGCACACGCATCTGATGCAATATACGGTCTGTC
TTAGATCGACTCCGGCGGATCGTTTATCGAGTGCGCAGACCGCATTTTAGCGCGTGCCCT
AGAAGAAATGATGAACGATGTGCTTGACTATGTTAAGACTATATGATGCGGACCATTGAA
AAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGGAA
CTGTCGTTCGTATTTTTGCGTTTTCAC

consensusID : consensus_4781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 443
fasta sequence

                              [GCCGCGCGGGGCGGCAAGGGGATCCTGGTTCGTCGCAATTTATTATCTCATTAGAAGATGAACTGTTTAAATCTTATGACAAAGAAGAACTAGAAAAATGGCTCAGCAAAGTGAAAACCGGTGAAGACGGTCTTATTATTTCTCCAGACCCGGTGAAATTTGTAAAAAAAGTGCAAGAAACGGTCGAACATGCTCATTATTCTGCGCGCACCCATCTATTAAAGCTAGATTCTGTCATCGATCGACAAAGCAAAATCATTTATCAAATGCGCGATCGCATTTTAGCGTGTGCCCAAGAAGAAATGATGAACGAGGTGCTTGATTATATTAAAAACTATTTGATGCAGACCATTGAAAAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGGAACTGTCGTTCGTATTTTTGCGTTTTCAC]

[+] EMBL CD162589             [GCCGCGCGGGGCGGCAAGGGGATCCTGGTTCGTCGCAATTTATTATCTCATTAGAAGATGAACTGTTTAAATCTTATGACAAAGAAGAACTAGAAAAATGGCTCAGCAAAGTGAAAACCGGTGAAGACGGTCTTATTATTTCTCCAGACCCGGTGAAATTTGTAAAAAAAGTGCAAGAAACGGTCGAACATGCTCATTATTCTGCGCGCACCCATCTATTAAAGCTAGATTCTGTCATCGATCGACAAAGCAAAATCATTTATCAAATGCGCGATCGCATTTTAGCGTGTGCCCAAGAAGAAATGATGAACGAGGTGCTTGATTATATTAAAAACTATTTGATGCAGACCATTGAAAAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGGAACTGTCGTTCGTATTTTTGCGTTTTCAC]
[+] EMBL CD162568             [GCCGCGCGGGGCGGCAAGGGGATCCTGGTTCGTCGCAATTTATTATCTCATTAGAAGATGAACTGTTTAAATCTTATGACAAAGAAGAACTAGAAAAATGGCTCAGCAAAGTGAAAACCGGTGAAGACGGTCTTATTATTTCTCCAGACCCGGTGAAATTTGTAAAAAAAGTGCAAGAAACGGTCGAACATGCTCATTATTCTGCACGCACCCATCTATTAAAGCTAGATTCTGTCATCGATCGACAAAGCAAAATCATTTATCAAATGCGCGATCGCATTTTAGCGTGTGCCCAAGAAGAAATGATGAACGAGGTGCTTGATTATATTAAAAACTATTTGATGCAGACCATTGAAAAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGGAACTGTCGTTCGTATTTTTGCGTTTTCAC]




>consensus_4781#1
GCCGCGCGGGGCGGCAAGGGGATCCTGGTTCGTCGCAATTTATTATCTCATTAGAAGATG
AACTGTTTAAATCTTATGACAAAGAAGAACTAGAAAAATGGCTCAGCAAAGTGAAAACCG
GTGAAGACGGTCTTATTATTTCTCCAGACCCGGTGAAATTTGTAAAAAAAGTGCAAGAAA
CGGTCGAACATGCTCATTATTCTGCGCGCACCCATCTATTAAAGCTAGATTCTGTCATCG
ATCGACAAAGCAAAATCATTTATCAAATGCGCGATCGCATTTTAGCGTGTGCCCAAGAAG
AAATGATGAACGAGGTGCTTGATTATATTAAAAACTATTTGATGCAGACCATTGAAAAAT
ATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGGAACTGT
CGTTCGTATTTTTGCGTTTTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4781#0      GTCGAGCGGTGCGGCA-GGGGCTCCTGTTCTGGCACACTCGATGTATAGTAATTACACGA 59
consensus_4781#1      GCCGCGCGGGGCGGCAAGGGGATCCTGGTTCGTCGCAATTTAT-TATC-TCATTAGAAGA 58
                      * ** **** ****** **** ***** *  * * ** *  ** ***  * **** * **

consensus_4781#0      TGAACGGAGTAAAGCTTATACAGTTGGACTGACTTCAAAAATGGCTCGACTCAGTGAGTA 119
consensus_4781#1      TGAACTGTTTAAATCTTATG-ACAAAGAAGAACTAGAAAAATGGCTCAGCAAAGTGAAAA 117
                      ***** *  **** *****  *    **   ***  ***********  *  *****  *

consensus_4781#0      CCGGTGAGCACAGCTGTATTACTTGACCACAGCCGGGGCGATCTGTTAACACTGTGTCGG 179
consensus_4781#1      CCGGTGAAGACGGTCTTATTATTTCTCCAGACCCGGTGAAATTTGTAAAAAAAGTGCAAG 177
                      *******  ** *   ***** **  *** * **** *  ** *** ** *  ***   *

consensus_4781#0      ACACGAACGGAGAATGCGCATTATTTGGTGCACACGCATCTGATGCAATATACGGTCTGT 239
consensus_4781#1      AAACGGTCGAACA-TGCTCATTATTCTGCGCGCACCCATCT-ATTAAAGCTAGATTCTGT 235
                      * ***  ** * * *** *******  * ** *** ***** **  **  **   *****

consensus_4781#0      CTTAGATCGACTCCGGCGGATCGTTTATCGAGTGCGCAGACCGCATTTTAGCGCGTGCCC 299
consensus_4781#1      CATCGATCGACAAAGCAAAATCATTTATCAAATGCGC-GATCGCATTTTAGCGTGTGCCC 294
                      * * *******   *    *** ****** * ***** ** ************ ******

consensus_4781#0      TAGAAGAAATGATGAACGATGTGCTTGACTATGTTAAGA-CTATATGATGCGGACCATTG 358
consensus_4781#1      AAGAAGAAATGATGAACGAGGTGCTTGATTATATTAAAAACTATTTGATGCAGACCATTG 354
                       ****************** ******** *** **** * **** ****** ********

consensus_4781#0      AAAAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGG 418
consensus_4781#1      AAAAATATTGTTTGCCAGACGTTTTCTACGAAGAGTGGAACATCAAAGGCTTGCACGAGG 414
                      ************************************************************

consensus_4781#0      AACTGTCGTTCGTATTTTTGCGTTTTCAC 447
consensus_4781#1      AACTGTCGTTCGTATTTTTGCGTTTTCAC 443
                      *****************************