These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 512 fasta sequence [GTGAGTATAGGCGGAACCTATACTGCGAATAGATATTCAGTAAAACATAAAAGTGATCGAGAGAAAAGCCTGAAGTAAAGCATAACATGTTACAGACAAACAAAAACAGGCAAAATATAATCAGAAAAGGTAAATTGCAATTCGAGCGCTTGATAAAAACTACATAAAAGAGACCCTGGAATAACACACAAGAAAATTCCAACGTGAAACACTGACACGTGCACTTCAGAAATACGAAGAAACGCGTACAAACAAAAATGAAAAGGTCAAGGGTTAGAACTTACACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTTCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATGCAGCTATGA] [+] EMBL CD116041 [GTGAGTATAGGCGGAACCTATACTGCGAATAGATATTCAGTAAAACATAAAAGTGATCGAGAGAAAAGCCTGAAGTAAAGCATAACATGTTACAGACAAACAAAAACAGGCAAAATATAATCAGAAAAGGTAAATTGCAATTCGAGCGCTTGATAAAAACTACATAAAAGAGACCCTGGAATAACACACAAGAAAATTCCAACGTGAAACACTGACACGTGCACTTCAGAAATACGAAGAAACGCGTACAAACAAAAATGAAAAGGTCAAGGGTTAGAACTTACACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTT ] [-] EMBL CD162169 [ tcgtcgTATTCGACGATTACCTACAAAACCTGGACGATTCTTCTTGACAGGTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATGCAGCTATGA] consensusID : consensus_4787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [TTTTATTGGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTTTTTGCTGATTTATCTGGACGATTCTTCTTGACACCTGGCTTCTTTGNTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGATAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCATCAG] [-] EMBL CD157509 [TTTTATTGGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTTTTTGCTGATTTATCTGGACGATTCTTCTTGACACCTGGCTTCTTTGNTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGATAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4787#0 GTGAGTATAGGCGGAACCTATACTGCGAATAGATATTCAGTAAAACATAAAAGTGATCGA 60 consensus_4787#1 ------------------------------------------------------------ consensus_4787#0 GAGAAAAGCCTGAAGTAAAGCATAACATGTTACAGACAAACAAAAACAGGCAAAATATAA 120 consensus_4787#1 ------------------------------------------------------------ consensus_4787#0 TCAGAAAAGGTAAATTGCAATTCGAGCGCTTGATAAAAACTACATAAAAGAGACCCTGGA 180 consensus_4787#1 ------------------------------------------------------------ consensus_4787#0 ATAACACACAAGAAAATTCCAACGTGAAACACTGACACGTGCACTTCAGAAATACGAAGA 240 consensus_4787#1 ------------------------------------------------------------ consensus_4787#0 AACGCGTACAAACAAAAATGAAAAGGTCAAGGGTTAGAACTTACACCACATTTGTTTTAT 300 consensus_4787#1 ------------------------------------------------------TTTTAT 6 ****** consensus_4787#0 TCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTT 360 consensus_4787#1 TGGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTTTTTGCTGATTT 66 * ********************************************** *********** consensus_4787#0 AT------GGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACC 414 consensus_4787#1 ATCTGGACGATTCTTCTTGACACCTGGCTTCTTTGNTGATTTATGGATCATGTTGACACC 126 ** * ** * *************** *** ************************ consensus_4787#0 TCGCTTCATTGCTAATTTATGTTTCATGTTGACACCTCGCTTCATTGCTAATTTATGTTG 474 consensus_4787#1 TGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGATAATTTATGTTG 186 * *********** ******* ************************ ************ consensus_4787#0 ATTGTCAGATTGAACGAAGACTGCGAATGCAGCTATGA---------- 512 consensus_4787#1 ATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCATCAG 234 **************************** ********* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||