cluster # 4787

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Schistosoma mansoni
cluster # 4787 cluster # 4787 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4787#0 length = 512 sequences # 2

consensus_4787#1 length = 234 sequences # 1

consensusID : consensus_4787#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 512
fasta sequence

                              [GTGAGTATAGGCGGAACCTATACTGCGAATAGATATTCAGTAAAACATAAAAGTGATCGAGAGAAAAGCCTGAAGTAAAGCATAACATGTTACAGACAAACAAAAACAGGCAAAATATAATCAGAAAAGGTAAATTGCAATTCGAGCGCTTGATAAAAACTACATAAAAGAGACCCTGGAATAACACACAAGAAAATTCCAACGTGAAACACTGACACGTGCACTTCAGAAATACGAAGAAACGCGTACAAACAAAAATGAAAAGGTCAAGGGTTAGAACTTACACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTTCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATGCAGCTATGA]

[+] EMBL CD116041             [GTGAGTATAGGCGGAACCTATACTGCGAATAGATATTCAGTAAAACATAAAAGTGATCGAGAGAAAAGCCTGAAGTAAAGCATAACATGTTACAGACAAACAAAAACAGGCAAAATATAATCAGAAAAGGTAAATTGCAATTCGAGCGCTTGATAAAAACTACATAAAAGAGACCCTGGAATAACACACAAGAAAATTCCAACGTGAAACACTGACACGTGCACTTCAGAAATACGAAGAAACGCGTACAAACAAAAATGAAAAGGTCAAGGGTTAGAACTTACACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTT                                                                           ]
[-] EMBL CD162169             [                                                                                                                                                                                                                                                                                                   tcgtcgTATTCGACGATTACCTACAAAACCTGGACGATTCTTCTTGACAGGTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATGCAGCTATGA]




>consensus_4787#0
GTGAGTATAGGCGGAACCTATACTGCGAATAGATATTCAGTAAAACATAAAAGTGATCGA
GAGAAAAGCCTGAAGTAAAGCATAACATGTTACAGACAAACAAAAACAGGCAAAATATAA
TCAGAAAAGGTAAATTGCAATTCGAGCGCTTGATAAAAACTACATAAAAGAGACCCTGGA
ATAACACACAAGAAAATTCCAACGTGAAACACTGACACGTGCACTTCAGAAATACGAAGA
AACGCGTACAAACAAAAATGAAAAGGTCAAGGGTTAGAACTTACACCACATTTGTTTTAT
TCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTT
ATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTT
CATTGCTAATTTATGTTTCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTC
AGATTGAACGAAGACTGCGAATGCAGCTATGA

consensusID : consensus_4787#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [TTTTATTGGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTTTTTGCTGATTTATCTGGACGATTCTTCTTGACACCTGGCTTCTTTGNTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGATAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCATCAG]

[-] EMBL CD157509             [TTTTATTGGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTTTTTGCTGATTTATCTGGACGATTCTTCTTGACACCTGGCTTCTTTGNTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGATAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCATCAG]




>consensus_4787#1
TTTTATTGGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTTTTTGC
TGATTTATCTGGACGATTCTTCTTGACACCTGGCTTCTTTGNTGATTTATGGATCATGTT
GACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGATAATTT
ATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCATCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4787#0      GTGAGTATAGGCGGAACCTATACTGCGAATAGATATTCAGTAAAACATAAAAGTGATCGA 60
consensus_4787#1      ------------------------------------------------------------
                                                                                  

consensus_4787#0      GAGAAAAGCCTGAAGTAAAGCATAACATGTTACAGACAAACAAAAACAGGCAAAATATAA 120
consensus_4787#1      ------------------------------------------------------------
                                                                                  

consensus_4787#0      TCAGAAAAGGTAAATTGCAATTCGAGCGCTTGATAAAAACTACATAAAAGAGACCCTGGA 180
consensus_4787#1      ------------------------------------------------------------
                                                                                  

consensus_4787#0      ATAACACACAAGAAAATTCCAACGTGAAACACTGACACGTGCACTTCAGAAATACGAAGA 240
consensus_4787#1      ------------------------------------------------------------
                                                                                  

consensus_4787#0      AACGCGTACAAACAAAAATGAAAAGGTCAAGGGTTAGAACTTACACCACATTTGTTTTAT 300
consensus_4787#1      ------------------------------------------------------TTTTAT 6
                                                                            ******

consensus_4787#0      TCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTT 360
consensus_4787#1      TGGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTTTTTGCTGATTT 66
                      * ********************************************** ***********

consensus_4787#0      AT------GGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACC 414
consensus_4787#1      ATCTGGACGATTCTTCTTGACACCTGGCTTCTTTGNTGATTTATGGATCATGTTGACACC 126
                      **      *  ** * *************** *** ************************

consensus_4787#0      TCGCTTCATTGCTAATTTATGTTTCATGTTGACACCTCGCTTCATTGCTAATTTATGTTG 474
consensus_4787#1      TGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGATAATTTATGTTG 186
                      * *********** *******  ************************ ************

consensus_4787#0      ATTGTCAGATTGAACGAAGACTGCGAATGCAGCTATGA---------- 512
consensus_4787#1      ATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCATCAG 234
                      **************************** *********