cluster # 4789

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Schistosoma mansoni
cluster # 4789 cluster # 4789 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4789#0 length = 401 sequences # 1

consensus_4789#1 length = 325 sequences # 1
consensus_4789#2 length = 253 sequences # 1

consensusID : consensus_4789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [AGTGTTCTACCCACCTGTTTCGTTATTCTTCAATGTTGGTGATTATCTTGCCCTCCTTGCTTTTCACTGGTCTTTCTGGCTTACGGTAATTTCCAGCGAGTTTCTTTGTTGTGTCATACAATTGTCTTATGTTTCCTTCTCTTTCAGCCTTTTCCGCCATCATTGCTAGATCTTCCACATATTTAAGTTTGTTGGCTCTGGTGCTCCTCTCTATTTGCTTGTCTGCTTCTGTATATTCAGCTTGTGCTTTGGCTTTTTCTGCTCTTGTTAGGCTGGTATTGATTGTTGCCTTCTTGTTCCTCCTTTCTTGAACTTTATTCAGTGTATCAAAAGTGATCCATTCCTTGTGATGGTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGAAGTGATTGCCTCC]

[+] EMBL CD129368             [AGTGTTCTACCCACCTGTTTCGTTATTCTTCAATGTTGGTGATTATCTTGCCCTCCTTGCTTTTCACTGGTCTTTCTGGCTTACGGTAATTTCCAGCGAGTTTCTTTGTTGTGTCATACAATTGTCTTATGTTTCCTTCTCTTTCAGCCTTTTCCGCCATCATTGCTAGATCTTCCACATATTTAAGTTTGTTGGCTCTGGTGCTCCTCTCTATTTGCTTGTCTGCTTCTGTATATTCAGCTTGTGCTTTGGCTTTTTCTGCTCTTGTTAGGCTGGTATTGATTGTTGCCTTCTTGTTCCTCCTTTCTTGAACTTTATTCAGTGTATCAAAAGTGATCCATTCCTTGTGATGGTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGAAGTGATTGCCTCC]




>consensus_4789#0
AGTGTTCTACCCACCTGTTTCGTTATTCTTCAATGTTGGTGATTATCTTGCCCTCCTTGC
TTTTCACTGGTCTTTCTGGCTTACGGTAATTTCCAGCGAGTTTCTTTGTTGTGTCATACA
ATTGTCTTATGTTTCCTTCTCTTTCAGCCTTTTCCGCCATCATTGCTAGATCTTCCACAT
ATTTAAGTTTGTTGGCTCTGGTGCTCCTCTCTATTTGCTTGTCTGCTTCTGTATATTCAG
CTTGTGCTTTGGCTTTTTCTGCTCTTGTTAGGCTGGTATTGATTGTTGCCTTCTTGTTCC
TCCTTTCTTGAACTTTATTCAGTGTATCAAAAGTGATCCATTCCTTGTGATGGTGCTTCT
TGTGGCCCAGAACCTCCTGACATGTTGAAGTGATTGCCTCC

consensusID : consensus_4789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [GTGATGGTGCTTCTTGTGACCCAGAACCTCCTGACATGTTGAAACGATCGCCTCCTTGATACCTTTTCAGTTGCTCTCCATGGTAGTTCCCTCTTAGTTGAGTAGATCATGAAAGGCCTGGAACTTATTGTTGAGGGCTATGTTGAATTTGTTGAGTTTGTCAGCATCTCGAAGAAAGGCCGTGTTAAACTTTTGTGATGTTGTCCGCCTCGTCGCCCAGTGCTTCTTAAGTTTTAATTTCATCTTGGCGACCCAGCAATGATGATCGGATGCTATATCAGCCCCTCTTCTGCTTCTCACATCCTCCATCGNTCTCCTGAACTTT]

[+] EMBL CD139933             [GTGATGGTGCTTCTTGTGACCCAGAACCTCCTGACATGTTGAAACGATCGCCTCCTTGATACCTTTTCAGTTGCTCTCCATGGTAGTTCCCTCTTAGTTGAGTAGATCATGAAAGGCCTGGAACTTATTGTTGAGGGCTATGTTGAATTTGTTGAGTTTGTCAGCATCTCGAAGAAAGGCCGTGTTAAACTTTTGTGATGTTGTCCGCCTCGTCGCCCAGTGCTTCTTAAGTTTTAATTTCATCTTGGCGACCCAGCAATGATGATCGGATGCTATATCAGCCCCTCTTCTGCTTCTCACATCCTCCATCGNTCTCCTGAACTTT]




>consensus_4789#1
GTGATGGTGCTTCTTGTGACCCAGAACCTCCTGACATGTTGAAACGATCGCCTCCTTGAT
ACCTTTTCAGTTGCTCTCCATGGTAGTTCCCTCTTAGTTGAGTAGATCATGAAAGGCCTG
GAACTTATTGTTGAGGGCTATGTTGAATTTGTTGAGTTTGTCAGCATCTCGAAGAAAGGC
CGTGTTAAACTTTTGTGATGTTGTCCGCCTCGTCGCCCAGTGCTTCTTAAGTTTTAATTT
CATCTTGGCGACCCAGCAATGATGATCGGATGCTATATCAGCCCCTCTTCTGCTTCTCAC
ATCCTCCATCGNTCTCCTGAACTTT

consensusID : consensus_4789#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [GATACAACAAAGAAACTTGCTGGAAATCACCGTAAGCCAGAAAGACCAGTGAAAAGCAAGGAAGGCAAAGTAATCACCGACATTGAAAAACAACGAAACCGGTGGGTAGAACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAGCAGCACCCACGTACCTCTTCAGTAAGATTTGGGACGAAGATCAAGTACCAACAGACTGGAAAAAAGGACTTCTGATCAAGATACCAA]

[+] EMBL CD110742             [GATACAACAAAGAAACTTGCTGGAAATCACCGTAAGCCAGAAAGACCAGTGAAAAGCAAGGAAGGCAAAGTAATCACCGACATTGAAAAACAACGAAACCGGTGGGTAGAACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAGCAGCACCCACGTACCTCTTCAGTAAGATTTGGGACGAAGATCAAGTACCAACAGACTGGAAAAAAGGACTTCTGATCAAGATACCAA]




>consensus_4789#2
GATACAACAAAGAAACTTGCTGGAAATCACCGTAAGCCAGAAAGACCAGTGAAAAGCAAG
GAAGGCAAAGTAATCACCGACATTGAAAAACAACGAAACCGGTGGGTAGAACACTTCAAA
GAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAGCAGCACCCACGTAC
CTCTTCAGTAAGATTTGGGACGAAGATCAAGTACCAACAGACTGGAAAAAAGGACTTCTG
ATCAAGATACCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4789#0      AGTGTTCTACCCACCTGTTTCGTTATTCTTCAATGTTGGTGATTATCTTGCCCTCCTTGC 60
consensus_4789#1      -----------------------------------------GTGATGGTGC--TTCTTGT 17
consensus_4789#2      ------------------------------------------------------------
                                                                                  

consensus_4789#0      TTTTCACTGGTCTTTCTGGCTTACGGTAATTTCCAGCGAGTTTCTTTGTTGTGTCATACA 120
consensus_4789#1      GACCCA--GAACCTCCTGACATGTTGAAACGATC-----GCCTCCTTGATACCTT-TTCA 69
consensus_4789#2      -----------------------------------------------GATACAACAAAGA 13
                                                                     * *         *

consensus_4789#0      ATTGTCTTATGTT-TCCTTCTCTTTCAGCCTTTTCCGCCATCATTGCTAGATCTTCCACA 179
consensus_4789#1      GTTGCTCTCCATGGTAGTTCCCTCTTAGTTGAGTAGATCATGAA----AGGCCTGGAACT 125
consensus_4789#2      AACTTGCTGGAAA-----TCACCGTAAGCCAGAAAGACCAGTGA---AAAGCAAGGAAGG 65
                             *          ** *  * **          **        *        *  

consensus_4789#0      TATTTAAGTTTGTTGGCTCTGGTGCTCCTCTCTATTTGCTTGTCTGCTTCTGTATATTCA 239
consensus_4789#1      TATT----GTTGAGGGCTATGTTGAATTTGTTGA---GTTTGTCAGCATCT-CGAAGAAA 177
consensus_4789#2      CAAAGTA-ATCACCGACATTGAAAAACAACGAAACCGGTGGGTAGAACACTTCAAAG--A 122
                       *       *    * *  **            *   *   **      **    *   *

consensus_4789#0      GCTTGTGCTTTGGCTTTTTCTGCTCTTGTTAGGCTGGTATTGATTGTTGCCTTCTTGTTC 299
consensus_4789#1      GGCCGTG--TTAAACTTTTGTGATGTTGTCCGCCTCG--TCGCCCAGTGCTTCTTAAGTT 233
consensus_4789#2      ACTCTTGAATCGACCAGCTCCACTGA-ACCCACCCAACATCGAA-GCAGCACCCACGTAC 180
                           **  *        *    *         *     * *      **          

consensus_4789#0      CTCCTTTCTTGAACTTTATTCAGTGTATCAAAAGTGATCCATTCCTTGTGATGGTGCTTC 359
consensus_4789#1      TTAATTTC----ATCTTGG-CGACCCAGCAATGATGATCGGATGCT-ATATCAGCCCCTC 287
consensus_4789#2      CTCTTCAGTAAGATTTGGGACGAAGATCAAGTACCAACAGACTGGAAAAAAGGACTTCTG 240
                       *  *       *  *    *        *      *     *               * 

consensus_4789#0      TTGTGG--CCCAGAACCTCC--TGACATGTTGAAGTGATTGCCTCC 401
consensus_4789#1      TTCTGCTTCTCACATCCTCCATCGNTCTCCTGAACTTT-------- 325
consensus_4789#2      ATCAAGATACCAA--------------------------------- 253
                       *        **