cluster # 4797

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Schistosoma mansoni
cluster # 4797 cluster # 4797 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4797#0 length = 623 sequences # 1

consensus_4797#1 length = 272 sequences # 2

consensusID : consensus_4797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [TTGAACCAGCACTTGTTGTTTCCATCTTCCCCGTCACGACGTCTGCACACATTAACTTTAGATGAAATGCATACAGTTTTTTTTAAAGCGCGTTCATTCTTACGAAGCTCGTAAACCTGAAAAATGAGTGATGTTACAGAGAACACAGCAATACACGTTGCATATATTTCGTACTCGACACAAAACCAGATTACGCAGCTGAACACTTGAAAGCAATGAAACGGAGTGAGGCATCCATTCAAAACGAGCCTCATTATGGGTGTAAGACTGACATCGATCTTATTAATCCCATACAAGTTTCGACGAGTTTCAATTAGATCCGTAGTCAGGGTGGGTGCATTTAATACTTCATCGTAAGGACGTTCATCCCAGTTTTGTAGTAGCTCAAAATTTTCAGACTCGAAGTTCCAGATATACTTCAGCTTTTTATGTATGATATACGGGCGTTTTGTCTGGTTCTCAAGAAAAGCGTCCGTTGTCGAACTGTCATATTGAGACCTTGATTAAAAAAGAATAAAGGTTGGTTTTACTTATCTCACAGCCCATAATTTGCAACAGTAATATCAATCGAGTGTTAACTTAACCTTGACTTTCCTCGCGTAGGATATTGGACTNTATGGATG]

[+] EMBL CD162475             [TTGAACCAGCACTTGTTGTTTCCATCTTCCCCGTCACGACGTCTGCACACATTAACTTTAGATGAAATGCATACAGTTTTTTTTAAAGCGCGTTCATTCTTACGAAGCTCGTAAACCTGAAAAATGAGTGATGTTACAGAGAACACAGCAATACACGTTGCATATATTTCGTACTCGACACAAAACCAGATTACGCAGCTGAACACTTGAAAGCAATGAAACGGAGTGAGGCATCCATTCAAAACGAGCCTCATTATGGGTGTAAGACTGACATCGATCTTATTAATCCCATACAAGTTTCGACGAGTTTCAATTAGATCCGTAGTCAGGGTGGGTGCATTTAATACTTCATCGTAAGGACGTTCATCCCAGTTTTGTAGTAGCTCAAAATTTTCAGACTCGAAGTTCCAGATATACTTCAGCTTTTTATGTATGATATACGGGCGTTTTGTCTGGTTCTCAAGAAAAGCGTCCGTTGTCGAACTGTCATATTGAGACCTTGATTAAAAAAGAATAAAGGTTGGTTTTACTTATCTCACAGCCCATAATTTGCAACAGTAATATCAATCGAGTGTTAACTTAACCTTGACTTTCCTCGCGTAGGATATTGGACTNTATGGATG]




>consensus_4797#0
TTGAACCAGCACTTGTTGTTTCCATCTTCCCCGTCACGACGTCTGCACACATTAACTTTA
GATGAAATGCATACAGTTTTTTTTAAAGCGCGTTCATTCTTACGAAGCTCGTAAACCTGA
AAAATGAGTGATGTTACAGAGAACACAGCAATACACGTTGCATATATTTCGTACTCGACA
CAAAACCAGATTACGCAGCTGAACACTTGAAAGCAATGAAACGGAGTGAGGCATCCATTC
AAAACGAGCCTCATTATGGGTGTAAGACTGACATCGATCTTATTAATCCCATACAAGTTT
CGACGAGTTTCAATTAGATCCGTAGTCAGGGTGGGTGCATTTAATACTTCATCGTAAGGA
CGTTCATCCCAGTTTTGTAGTAGCTCAAAATTTTCAGACTCGAAGTTCCAGATATACTTC
AGCTTTTTATGTATGATATACGGGCGTTTTGTCTGGTTCTCAAGAAAAGCGTCCGTTGTC
GAACTGTCATATTGAGACCTTGATTAAAAAAGAATAAAGGTTGGTTTTACTTATCTCACA
GCCCATAATTTGCAACAGTAATATCAATCGAGTGTTAACTTAACCTTGACTTTCCTCGCG
TAGGATATTGGACTNTATGGATG

consensusID : consensus_4797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 272
fasta sequence

                              [CTTTAAAAAAAACTGTATGCATTTCATCTAAAGTTAATGTGTGCAGACGTCGTGACGGGGAAGATGATTTTATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATTTAATCGCCATTCCCAGTAGTGGATGTTTGATGCAATGTGATGCAGTATTACTGATGGGGAACTGCATTGTGAATGAAAGTAGCTTAACAGGTGAAAGCCTTCCGATTACAAAAATCCCACTTCCCAATGGACAATATGAAAATACTACGTTTGATTTTCGTTCA]

[+] EMBL CD195718             [CTTTAAAAAAAACTGTATGCATTTCATCTAAAGTTAATGTGTGCAGACGTCGTGACGGGGAAGATGATTTTATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATTTAATCGCCATTCCCAGTAGTGGATGTTTGATGCAATGTGATGCAGTATTACTGATGGGGAACTGCATTGTGAATGAAAGTAGCTTAACAGGTGAAAGCC                                                                 ]
[+] EMBL CD182698             [                                                                  gaTTTATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATTTAATCGCCATTCCCAGTAGTGGATGTTTGATGCAATGTGATGCAGTATTACTGATGGGGTACTGCATTGTGAATGAAAGTAGCTTAACAGGTGAAAGCCTTCCGATTACAAAAATCCCACTTCCCAATGGACAATATGAAAATACTACGTTTGATTTTCGTTCA]




>consensus_4797#1
CTTTAAAAAAAACTGTATGCATTTCATCTAAAGTTAATGTGTGCAGACGTCGTGACGGGG
AAGATGATTTTATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATTTAATCGCCATTC
CCAGTAGTGGATGTTTGATGCAATGTGATGCAGTATTACTGATGGGGAACTGCATTGTGA
ATGAAAGTAGCTTAACAGGTGAAAGCCTTCCGATTACAAAAATCCCACTTCCCAATGGAC
AATATGAAAATACTACGTTTGATTTTCGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4797#0      TTGAACCAGCACTTGTTGTTTCCATCTTCCCCGTCACGACGTCTGCACACATTAACTTTA 60
consensus_4797#1      -------------------------------------------------------CTTTA 5
                                                                             *****

consensus_4797#0      GATGAAA-TGCATACAGTTTTTTTTAAAGCGCGTTCATTCTTACGAAGCTCGTAAACCTG 119
consensus_4797#1      AAAAAAACTGTATGCA-TTTCATCTAAA----GTTAATGTGTGCAGACGTCGTGA-CGGG 59
                       *  *** ** ** ** ***  * ****    *** **   * *  *  **** * *  *

consensus_4797#0      AAAAATGAGTGATGTTACAGAGAACACAGCAATACACGTTGCATATATTTCGTACTCGAC 179
consensus_4797#1      GAAGATGATTT-TATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATT--TAATCGCC 116
                       ** **** *  * *    *   *  ** *   *   **  **     **  ** *** *

consensus_4797#0      ACAAAACCAGATTACGCAGCTGAACACTTGAAAGCAATGAAACGGAGTGAGGCATCCATT 239
consensus_4797#1      AT---------TCCCAGTAGTGGATGTTTGAT-GCAATGTGATGCAGTA------TTACT 160
                      *          *  *     ** *   ****  ******  * * ***         * *

consensus_4797#0      CAAAACGAGCCTCATTATGGGTGTAAGACTGACATCGATCTTATTAATCCCATACAAGTT 299
consensus_4797#1      GATGGGGAACTGCATTGTGAATGAAAG--TAGCTT--AACAGGTGAAAGCCTTCCGA--T 214
                       *    ** *  **** **  ** ***  *  * *  * *   * **  ** * * *  *

consensus_4797#0      TCGACGAGTTTCAATTAGATCCGTAGTCAGGGTGGGTGCATTTAATACTTCATCGTAAGG 359
consensus_4797#1      TACAAAAATCCCACTT--CCCAATGGACAATATGAA-------AATACTACGTTTGATTT 265
                      *  *  * *  ** **    *  * * **   **         ****** * *   *   

consensus_4797#0      ACGTTCATCCCAGTTTTGTAGTAGCTCAAAATTTTCAGACTCGAAGTTCCAGATATACTT 419
consensus_4797#1      TCGTTCA----------------------------------------------------- 272
                       ******                                                     

consensus_4797#0      CAGCTTTTTATGTATGATATACGGGCGTTTTGTCTGGTTCTCAAGAAAAGCGTCCGTTGT 479
consensus_4797#1      ------------------------------------------------------------
                                                                                  

consensus_4797#0      CGAACTGTCATATTGAGACCTTGATTAAAAAAGAATAAAGGTTGGTTTTACTTATCTCAC 539
consensus_4797#1      ------------------------------------------------------------
                                                                                  

consensus_4797#0      AGCCCATAATTTGCAACAGTAATATCAATCGAGTGTTAACTTAACCTTGACTTTCCTCGC 599
consensus_4797#1      ------------------------------------------------------------
                                                                                  

consensus_4797#0      GTAGGATATTGGACTNTATGGATG 623
consensus_4797#1      ------------------------