cluster # 4799

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Schistosoma mansoni
cluster # 4799 cluster # 4799 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4799#0 length = 504 sequences # 1

consensus_4799#1 length = 314 sequences # 2

consensusID : consensus_4799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAAATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATAACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAACTGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGAATTAGAGATATTTTGTTCGGTAGT]

[+] EMBL CD189299             [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAAATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATAACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAACTGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGAATTAGAGATATTTTGTTCGGTAGT]




>consensus_4799#0
CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT
CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAA
ATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGAT
AGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGT
CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG
GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATA
ACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAAC
TGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGA
ATTAGAGATATTTTGTTCGGTAGT

consensusID : consensus_4799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 314
fasta sequence

                              [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT]

[+] EMBL CD200564             [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT]
[+] EMBL CD091750             [    TCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGCTGGTACTT                                    ]




>consensus_4799#1
CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT
CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATG
ACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTT
CTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTT
GTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGG
AGGTGGGACAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4799#0      CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT 60
consensus_4799#1      CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT 60
                      ************************************************************

consensus_4799#0      CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAA 120
consensus_4799#1      CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGC----- 115
                      *******************************************************     

consensus_4799#0      ATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGAT 180
consensus_4799#1      -------------------------------------TTATGACGCTCAGCTAATGTGAT 138
                                                           ***********************

consensus_4799#0      AGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGT 240
consensus_4799#1      AGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGT 198
                      ******************************** ***************************

consensus_4799#0      CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG 300
consensus_4799#1      CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG 258
                      ************************************************************

consensus_4799#0      GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATA 360
consensus_4799#1      GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT---- 314
                      ******************************************* ************    

consensus_4799#0      ACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAAC 420
consensus_4799#1      ------------------------------------------------------------
                                                                                  

consensus_4799#0      TGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGA 480
consensus_4799#1      ------------------------------------------------------------
                                                                                  

consensus_4799#0      ATTAGAGATATTTTGTTCGGTAGT 504
consensus_4799#1      ------------------------