cluster # 4800

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Schistosoma mansoni
cluster # 4800 cluster # 4800 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4800#0 length = 578 sequences # 1

consensus_4800#1 length = 468 sequences # 2

consensusID : consensus_4800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [GGGAAACATTTTACAATTGAAAGGCAAAATTTATAGAGAATCTAGTAGTAACAGACAACGCCCAGTAGAATTAAAAATAAGAATTGACCTAAAAAACGGATACTTTTTGTAGTCTTACCGTTTCCTGAGTGAACTTCCTAGGGTAATGGAATCTTTATAAAAGTGTCTGTACTGCTTGAGCTACTGCACGTTATGTCAGTCAGCCGGCTACAACGTAGGACCACGCACATATATGCATCAGTCCAAGTTACCATAACCTCATTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGTTAATTAAGTGGTGGTAATATATAAAAGAAAGATTGTATATAACGATATAGTACAGAAAGAAAAAAGATATGAAGCAATTTTAATCTCATACTTTAAGGGAAGATAGAGAGTGCATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACACACAGTCTCCAACCATTGGTCACGATAGTCACGCGGACCCCAACCAGGTAGTCTGCATCTGCCAACATGGCTCAGGCTAGAAGTTAGTGACTTCAAGCACTGATGCCAAGTTTTGGTTTGGCCG]

[+] EMBL CD091462             [GGGAAACATTTTACAATTGAAAGGCAAAATTTATAGAGAATCTAGTAGTAACAGACAACGCCCAGTAGAATTAAAAATAAGAATTGACCTAAAAAACGGATACTTTTTGTAGTCTTACCGTTTCCTGAGTGAACTTCCTAGGGTAATGGAATCTTTATAAAAGTGTCTGTACTGCTTGAGCTACTGCACGTTATGTCAGTCAGCCGGCTACAACGTAGGACCACGCACATATATGCATCAGTCCAAGTTACCATAACCTCATTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGTTAATTAAGTGGTGGTAATATATAAAAGAAAGATTGTATATAACGATATAGTACAGAAAGAAAAAAGATATGAAGCAATTTTAATCTCATACTTTAAGGGAAGATAGAGAGTGCATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACACACAGTCTCCAACCATTGGTCACGATAGTCACGCGGACCCCAACCAGGTAGTCTGCATCTGCCAACATGGCTCAGGCTAGAAGTTAGTGACTTCAAGCACTGATGCCAAGTTTTGGTTTGGCCG]




>consensus_4800#0
GGGAAACATTTTACAATTGAAAGGCAAAATTTATAGAGAATCTAGTAGTAACAGACAACG
CCCAGTAGAATTAAAAATAAGAATTGACCTAAAAAACGGATACTTTTTGTAGTCTTACCG
TTTCCTGAGTGAACTTCCTAGGGTAATGGAATCTTTATAAAAGTGTCTGTACTGCTTGAG
CTACTGCACGTTATGTCAGTCAGCCGGCTACAACGTAGGACCACGCACATATATGCATCA
GTCCAAGTTACCATAACCTCATTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGT
TAATTAAGTGGTGGTAATATATAAAAGAAAGATTGTATATAACGATATAGTACAGAAAGA
AAAAAGATATGAAGCAATTTTAATCTCATACTTTAAGGGAAGATAGAGAGTGCATACACC
TACGCCATTGTGATCGATTCTGAGCCATGTCACACACAGTCTCCAACCATTGGTCACGAT
AGTCACGCGGACCCCAACCAGGTAGTCTGCATCTGCCAACATGGCTCAGGCTAGAAGTTA
GTGACTTCAAGCACTGATGCCAAGTTTTGGTTTGGCCG

consensusID : consensus_4800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 468
fasta sequence

                              [ATTGGTTACGACAGTCACGCGGACCCCGACCAAGTAGTCTGCATCTACCAACATGGCTCAGACTAGAAGTTAGTGACTTCAAGCACTGATGTCACGTTTTGGTTTGGTCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAGCATTGTGCGTCGTGGTAATCGGTGTTCAGGCATATGTAACAAGTGGGTTCGAGTCCCAGAGTGAATATCAACTCAGATGCACTTACATCCGGCTGACGAATTCCAAGTAGGACGAAACGCGCATCCAACTGGATTCCACTGCCAGCCTTTTTCTATCTTTGCTTATAAGGATTGAGTTCTCATGAAAATATATTGGCTACATTAAAATAAACAACTATTTCACATAAACACAAACAACTTTTCACTTACTGGTGTATTTGATAAAACTATTTGTTCCAAAAATTTTTCA-AGATGGTTCACTATACGCTTT-CTTAAATAAT]

[+] EMBL CD113543             [ATTGGTTACGACAGTCACGCGGACCCCGACCAAGTAGTCTGCATCTACCAACATGGCTCAGACTAGAAGTTAGTGACTTCAAGCACTGATGTCACGTTTTGGTTTGGTCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAGCATTGTGCGTCGTGGTAATCGGTGTTCAGGCATATGTAACAAGTGGGTTCGAGTCCCAGAGTGAATATCAACTCAGATGCACTTACATCCGGCTGACGAATTCCAAGTAGGACGAAACGCGCATCCAACTGGATTCCACTGCCAGCCTTTTTCTATCTTTGCTTATAAGGATTGAGTTCTCATGAAAATATATTGGCTACATTAAAATAAACAACTATTTCACATAAACACAAACAACTTTTCACTTACTGGTGTATTTGATAAAACTATTTGTTCCAAAAATTTTTCA AGATGGTTCACTATACGCTTT CTTAAATAA ]
[-] EMBL CD113610             [ TTGGCTACGATAGTCACGCGGACCCCGCCCAAGTAGTCTGCATGTACCAACATGGCTCTGACTAGAAGTTAGTGACTTCAAGCACTGATGTCACGTTTTGGTTTGGTCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAGCATTGTGCGTCGTGGTAATCGGTGTTCAGGCACATGTAACAAGTGGGTTCGAGTCCCAGAGTGAATATCAACTCAGATGCGCTTACATCCGGCTGACGAATTCCAAGTAGCACGAAACGCGCATCCAACTGGATTCCACTGCCAGCCTTTTTCTATCTTTGCTTATAAGGAGTGAGTTCTCATGAAAATATATTGCCTACATTAAAATAAACAACTATTTCACATAAACACAAACAACTTTTCACTTACTGGTGTATTTGATAAAACTATTTGTTCCAAAAATTTTTCATAGATGGTTCACTATACGCTTTCCTTAAATAAT]




>consensus_4800#1
ATTGGTTACGACAGTCACGCGGACCCCGACCAAGTAGTCTGCATCTACCAACATGGCTCA
GACTAGAAGTTAGTGACTTCAAGCACTGATGTCACGTTTTGGTTTGGTCGCCCCTAACTC
TCTTCCAACCATCCCCAACACTAGTCAGCATTGTGCGTCGTGGTAATCGGTGTTCAGGCA
TATGTAACAAGTGGGTTCGAGTCCCAGAGTGAATATCAACTCAGATGCACTTACATCCGG
CTGACGAATTCCAAGTAGGACGAAACGCGCATCCAACTGGATTCCACTGCCAGCCTTTTT
CTATCTTTGCTTATAAGGATTGAGTTCTCATGAAAATATATTGGCTACATTAAAATAAAC
AACTATTTCACATAAACACAAACAACTTTTCACTTACTGGTGTATTTGATAAAACTATTT
GTTCCAAAAATTTTTCAAGATGGTTCACTATACGCTTTCTTAAATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4800#0      GGGAAACATTTTACAATTGAAAGGCAAAATTTATAGAGAATCTAGTAGTAACAGACAACG 60
consensus_4800#1      -------------------------ATTGGTTAC-GACAGTCACGCGGACCCCGACCAAG 34
                                               *    ***  ** * **  *  *   * *** * *

consensus_4800#0      CCCAGTAGAATTAAAAATAAGAATTGACCTAAAAAACGGATACTTTTTGTAGTCTTACCG 120
consensus_4800#1      TAGTCTGCATCTACCAACATGGCTCAGACTAGAAGTTAGTGACTTCAAGCACTGATGTCA 94
                           *  *  **  ** * *  *    *** **    *  ****   * * *  *  * 

consensus_4800#0      TTTCCTGAGTGAACTTCCTAGGGTAATGGAATCTTTATAAAAGTGTCTGTACTGCTTGAG 180
consensus_4800#1      CGTTTTGGTTTGGTCGCCCC---TAACT--CTCTTCCAACCATCCCCAACACTAGTCAG- 148
                        *  **  *      **     ***     ****   *  *    *   ***  *    

consensus_4800#0      CTACTGCACGTTATGTCAGTCAGCCGGCTACAACGTAGGACCACGCACATATATGCATCA 240
consensus_4800#1      -CATTGTGCGTCGTGGTAATCGGT--GTTCAGGCATATG-TAACAAGTGGGTTCGAGTC- 203
                        * **  ***  **  * ** *   * *    * ** *   **       *  *  ** 

consensus_4800#0      GTCCAAGTTACCATAACCTCATTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGT 300
consensus_4800#1      -CCAGAGTGAATATCAACTCAGATGCACTTACATCCGGCTGACGAATTCCAAGTAGGACG 262
                        *  *** *  ** * ****   ****    *   *     ** ****  ** ** *  

consensus_4800#0      TAATTAAGTGGTGGTAATATATAAAAGAAAGATTGTATATAACGATATAGTACAGAAAGA 360
consensus_4800#1      AAACGCGCATCCAACTGGATTCCACTGCCAGCCTTTTTCTATCTTTGCT-TATAAGGATT 321
                       **               **   *  *  **  * * * ** *  *    ** *   *  

consensus_4800#0      AAAAAGATATGAAGCAATTTTAATCTCATACTTTAAGGGAAGATAGAGAGTGCATACACC 420
consensus_4800#1      GAGTTCTCATGAAAATATATTGGCTACAT-TAAAATAAACAACTATTTCACATAAACACA 380
                       *      *****   ** **     ***     *     *  **        * **** 

consensus_4800#0      TACGCCATTGTGATCGATTCTGAGCCATGTCACAC-ACAGTCTCCAACCATTGGTCACGA 479
consensus_4800#1      AACAACTTTTCACTTACTGGTGTATTTGATAAAACTATTTGTTCCAAAAATTTTTCAAGA 440
                       **  * **    *   *  **       * * ** *     *****  ***  *** **

consensus_4800#0      TAGTCACGCGGACCCCAACC-AGGTAGTCTGCATCTGCCAACATGGCTCAGGCTAGAAGT 538
consensus_4800#1      TGGTTCACTATACGCTTTCTTAAATAAT-------------------------------- 468
                      * **       ** *   *  *  ** *                                

consensus_4800#0      TAGTGACTTCAAGCACTGATGCCAAGTTTTGGTTTGGCCG 578
consensus_4800#1      ----------------------------------------