cluster # 4806

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Schistosoma mansoni
cluster # 4806 cluster # 4806 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4806#0 length = 462 sequences # 2

consensus_4806#1 length = 414 sequences # 1

consensusID : consensus_4806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 462
fasta sequence

                              [ACTTAGTCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGAAATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTAATTCTATTGTATTAGGTACTGATGAAACAAGCTGAACACTTT-GCCCAACCACTGGT-GCAAAGCC-GGCAGCAGAAGTTCCT]

[-] EMBL CD155321             [ACTTAGTCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGAAATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTAATTCTATTGTATTAGGTACTGATGAAACAAGCTGAACACTTT GCCCAACCACTGGT GCAAAGCC GGCAGCAGAAGT    ]
[+] EMBL CD148795             [     tgCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGAAATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTATTTGAACCCACAGGAGCATTTGGATCANCAGCTGGCATGCGAGCCTGGATTTTTTGAACCTCTTCTAAATCAATGGGTTCGATATCTAACCCTGCTTGTGAAGGCTCTTGAGGGACAACCATCGACCAATCATATGCATTATTCGCTCATTCTATTGTATTAAGGACTGATGAAACAAGCTGAACATTTTGGCCCCACCACTGGTGGCCAATCCGGGGAGCACAAATTCCT]




>consensus_4806#0
ACTTAGTCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGA
AATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTT
GACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACA
TCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTATTTGAA
CCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCT
AAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGAC
GAATCATATGCATTATTCGCTAATTCTATTGTATTAGGTACTGATGAAACAAGCTGAACA
CTTTGCCCAACCACTGGTGCAAAGCCGGCAGCAGAAGTTCCT

consensusID : consensus_4806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [TTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTTAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTATTNCACTNNGTGCAAGCCGCAGCAGAAGTCCATANACACTTGAGTATTCTGAAACTGGATTTCGTCACGTTTAAATCTTCATTTACGAGCGATNCTGATAGAGGCTGCAAAGAATTGCATCAAAC]

[+] EMBL CD182495             [TTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTTAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTATTNCACTNNGTGCAAGCCGCAGCAGAAGTCCATANACACTTGAGTATTCTGAAACTGGATTTCGTCACGTTTAAATCTTCATTTACGAGCGATNCTGATAGAGGCTGCAAAGAATTGCATCAAAC]




>consensus_4806#1
TTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAA
TCTGTTGTTAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTA
TAATCCTGATGGGGTTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATG
CGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGT
GAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTATTNCACTNNGT
GCAAGCCGCAGCAGAAGTCCATANACACTTGAGTATTCTGAAACTGGATTTCGTCACGTT
TAAATCTTCATTTACGAGCGATNCTGATAGAGGCTGCAAAGAATTGCATCAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4806#0      ACTTAGTCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGA 60
consensus_4806#1      ------------------------------------------------------------
                                                                                  

consensus_4806#0      AATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTT 120
consensus_4806#1      ----------------------------------TTGCACTTGGTCGAGAACCGCTACTT 26
                                                        **************************

consensus_4806#0      GACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACA 180
consensus_4806#1      GACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTTAGTGCTCGTCGGATACA 86
                      ****************************************** *****************

consensus_4806#0      TCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTT-ATTTGA 239
consensus_4806#1      TCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTTATTTGA 146
                      ***************************************************** ******

consensus_4806#0      ACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTC 299
consensus_4806#1      ACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTC 206
                      ************************************************************

consensus_4806#0      TAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGA 359
consensus_4806#1      TAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGA 266
                      ************************************************************

consensus_4806#0      CGAATCATATGCATTATTCGCTAATTCTATTGTATTAGGTACTGATGAAACAAGCTGAAC 419
consensus_4806#1      CGAATCATATGCATTATTCGCTATTNCACTNNGTGCAAGCCGCAGCAGAAGTCCATANAC 326
                      *********************** * *  *      * *         **     *  **

consensus_4806#0      ACTT---TGCCCAACCACTGGTGCAAAGCCGGCAGCAGAAGTTCCT-------------- 462
consensus_4806#1      ACTTGAGTATTCTGAAACTGG-ATTTCGTCACGTTTAAATCTTCATTTACGAGCGATNCT 385
                      ****   *   *    *****      * *      * *  *** *              

consensus_4806#0      -----------------------------
consensus_4806#1      GATAGAGGCTGCAAAGAATTGCATCAAAC 414