These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 364 fasta sequence [CACTGACTGTACAGCATCCGACACAGAACCCGTCTGCAGTCTGTCCTCAGTCAATGACGGCATCGGAACCGTGATCGTTTCTACATCCCAACTGGTCTCGTCGATCGGCTCAGGTGTCGCTTCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGGATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAAGATCATTAGGAAGGGATAAGAAGAAATTGTCTACAAAGCCAACAGATGGAGCGGT] [+] EMBL CD145994 [CACTGACTGTACAGCATCCGACACAGAACCCGTCTGCAGTCTGTCCTCAGTCAATGACGGCATCGGAACCGTGATCGTTTCTACATCCCAACTGGTCTCGTCGATCGGCTCAGGTGTCGCTTCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGGATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG ] [+] EMBL CD130945 [ AAACGAAGGAGGAGAAGACGAACCACTCTC GACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAAGATCATTAGGAAGGGATAAGAAGAAATTGTCTACAAAGCCAACAGATGGAGCGGT] consensusID : consensus_4808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [ATGCTTCATATCACTCTGCACTGATGGATCATCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGATGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG] [+] EMBL CD145911 [ATGCTTCATATCACTCTGCACTGATGGATCATCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGATGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4808#0 ------CAC-TGACTGTACAGCATCCGA-CACAGAACC-----CGTCTGCAGTCT-GTCC 46 consensus_4808#1 ATGCTTCATATCACTCTGCACTGATGGATCATCGAATCGACGACACCTGGAGAAGAGGAG 60 ** * *** * ** ** ** *** * * *** ** * consensus_4808#0 TCAGTCAA--TGACGG-CATCGGAACCGTGATCGTTTCT-----ACATCCCAACTGGTCT 98 consensus_4808#1 TTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGA 120 * ** ** ****** ** ** * *** * * * * ** consensus_4808#0 CGTCGATCGGCTCAGGTGTCGCTT--CGAATCGACGACACCTGGAGAAGAGGAGTTGGTG 156 consensus_4808#1 AGACGAACCACTCTCGGACCACTGGGCGAATCGATGACACCTGGAGAAGAGGAGTTGGTG 180 * *** * *** * * ** ******** ************************* consensus_4808#0 AACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGA 216 consensus_4808#1 AACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGA 240 ************************************************************ consensus_4808#0 ACCACTCTCGGACCACTGGGCGGATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTG 276 consensus_4808#1 ACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTG 300 ********************** ************************************* consensus_4808#0 ACGGACAAACAGGGTGTAGTTGTTGGTCAGGAAGATCATTAGGAAGGGATAAGAAGAAAT 336 consensus_4808#1 ACGGACAAACAGGGTGTAGTTGTTGGTCAGG----------------------------- 331 ******************************* consensus_4808#0 TGTCTACAAAGCCAACAGATGGAGCGGT 364 consensus_4808#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||