cluster # 4812

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Schistosoma mansoni
cluster # 4812 cluster # 4812 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4812#0 length = 620 sequences # 2

consensus_4812#1 length = 235 sequences # 1

consensusID : consensus_4812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 620
fasta sequence

                              [CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACCGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTT-TGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAGTGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGC-AAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCC]

[+] EMBL CD084918             [CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACCGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTT TGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAGTGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGC AAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCC]
[+] EMBL CD084946             [CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAAGC AGCGTGTGGGTGAATGAATGTGT                                                                 ]




>consensus_4812#0
CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACCGAACTTGTTGTGG
AATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTG
GAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATA
ATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGAT
GGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAG
CTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGC
ACTGTTTTCGCAGGAACTGAACTTGTTTGGAATGGAGCGATAGACGGTGACGACTGAGAG
ATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAGTGACTGAGGGAAGTATTGTA
CAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGTG
GGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAAC
CGGATGTGTGATAGTCGTCC

consensusID : consensus_4812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [AGAAAATCAGTGTTGGGTGAATTGTATGTTAAAATGTTTTTGTTGTTGTTGTATATTTGTAGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAA]

[+] EMBL CD126553             [AGAAAATCAGTGTTGGGTGAATTGTATGTTAAAATGTTTTTGTTGTTGTTGTATATTTGTAGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAA]




>consensus_4812#1
AGAAAATCAGTGTTGGGTGAATTGTATGTTAAAATGTTTTTGTTGTTGTTGTATATTTGT
AGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGA
CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGG
AATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4812#0      CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACCGAACTTGTTGTGG 60
consensus_4812#1      ------------------------------------------------------------
                                                                                  

consensus_4812#0      AATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTG 120
consensus_4812#1      ------------------------------------------------------------
                                                                                  

consensus_4812#0      GAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATA 180
consensus_4812#1      ------------------------------------------------------------
                                                                                  

consensus_4812#0      ATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGAT 240
consensus_4812#1      --------------AGAAAATCAGTGT-TGGGTGAATTG-TATGTTAAAATGTTTTTGTT 44
                                    ** **   ** ** *********   * ****     **    * *

consensus_4812#0      GGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAG 300
consensus_4812#1      GTTG-------------TTGTATATTTG--TAGATGTGTGATAGTCGTCCAGTGAATGAG 89
                      *  *             ***  ** *      ****************************

consensus_4812#0      CTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGC 360
consensus_4812#1      CTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGC 149
                      ************************************************************

consensus_4812#0      ACTGTTTTCGCAGGAACTGAACTTGTT-TGGAATGGAGCGATAGACGGTGACGACTGAGA 419
consensus_4812#1      ACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGA 209
                      *************************** ********************************

consensus_4812#0      GATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAGTGACTGAGGGAAGTATTGT 479
consensus_4812#1      GATCAGACACGAAGCAGTGAATAAAA---------------------------------- 235
                      **************************                                  

consensus_4812#0      ACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGT 539
consensus_4812#1      ------------------------------------------------------------
                                                                                  

consensus_4812#0      GGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAA 599
consensus_4812#1      ------------------------------------------------------------
                                                                                  

consensus_4812#0      CCGGATGTGTGATAGTCGTCC 620
consensus_4812#1      ---------------------