cluster # 4813

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Schistosoma mansoni
cluster # 4813 cluster # 4813 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4813#0 length = 773 sequences # 2

consensus_4813#1 length = 470 sequences # 1

consensusID : consensus_4813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 773
fasta sequence

                              [ACGGGCTGAAACGAAGAAACATGTCCCTCTGCCTCCGTACGTGTGCACACTTTTAATTCATCAACAAGAAATGCTACACAACGTTGCAGGTGTTGTTCACGTACCTCATTAATATATTCAATTTCATTTGCTGAAGCATCCCAACGATTATTAATGATAAAAATATTTGGTTTGGATAACTTCTGACTGACTTTATGGAAGAAATCTTTCTCGGCTTGCATTAATGTTGACTCAGCATTAGCAACAAGAATGAAAACATCAGCATCCAAACAGTGAAGATCAATCCATTTATCCATATCTGGATCAACATTAATTCCTGGACTATCTAGTAGAACAACATCTTCACGTAACAGCCTACAATATGAACTTGGCCAGAATATTTTTAGTAGTGTGTCTGTAGAGAGTTTGACATTGCTTAATGCATGAGCCAACTGACCAACGGAATCAATAGGACGAGCCTGGTGAGAAATATCTGACGTTTCTTTAGCATTGGTACCAGAGTCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCCCCTGAATTTCAAGGAAACAACTGGTGGTGTGGCCCAAACCAGAAAGTAACAATTTTGAACCCAACATTGCGTTAATAACAGTACTCTNTCCATTTGATGTTCTCCCAAAAAAAGCACATTTCATTTGATTACGAGCAATAATTTCCTGAATATTGCGGATTTTCTGTAAATGATGTTCAACTTCAGCATGCAAGAGACTTGTCCCAAATCGATTCCCCGGCCGCCATGCGTCCGG]

[+] EMBL CD162215             [ACGGGCTGAAACGAAGAAACATGTCCCTCTGCCTCCGTACGTGTGCACACTTTTAATTCATCAACAAGAAATGCTACACAACGTTGCAGGTGTTGTTCACGTACCTCATTAATATATTCAATTTCATTTGCTGAAGCATCCCAACGATTATTAATGATAAAAATATTTGGTTTGGATAACTTCTGACTGACTTTATGGAAGAAATCTTTCTCGGCTTGCATTAATGTTGACTCAGCATTAGCAACAAGAATGAAAACATCAGCATCCAAACAGTGAAGATCAATCCATTTATCCATATCTGGATCAACATTAATTCCTGGACTATCTAGTAGAACAACATCTTCACGTAACAGCCTACAATATGAACTTGGCCAGAATATTTTTAGTAGTGTGTCTGTAGAGAGTTTGACATTGCTTAATGCATGAGCCAACTGACCAACGGAATCAATAGGACGAGCCTGGTGAGAAATATCTGACGTTTCTTTAGCATTGGTACCAGAGTCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCCCCTGAATTTCAAGGAAACAACTGGTGGTGTGGCCCAAACCAGAAAGTAACAATTTTGAACCCAACATTGCGTTAATAACAGTACTCTNTC                                                                                                                                                 ]
[-] EMBL CD162251             [                                                                                                                                                                                    TTCTGACTGACTTTATGGAAGAAATCTTTCTCGGCTTGCATTAATGTTGACTCAGCATTAGCAACAAGAATGAAAACATCAGCATCCAAACAGTGAAGATCAATCCATTTATCCATATCTGGATCAACATTAATTCCTGGACTATCTAGTAGAACAACATCTTCACGTAACAGCCTACAATATGAACTTGGCCAGAATATTTTTAGTAGTGTGTCTGTAGAGAGTTTGACATTGCTTAATGCATGAGCCAACTGACCAACGGAATCAATAGGACGAGCCTGGTGAGAAATATCTGACGTTTCTTTAGCATTGGTACCAGAATCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCCCCTGAATTTCAAGGAAACAACTGGTGGTGTGGCCCAAACCAGAAGGTAACAATTTTGAACCCAACATTGCGTTGATAACAGTACTCTTTCCATTTGATGTTCTCCCAAAAAAAGCACATTTCATTTGATTACGAGCAATAATTTCCTGAATATTGCGGATTTTCTGTAAATGATGTTCAACTTCAGCATGCAAGAGACTTGTCCCAAATCGATTCCCCGGCCGCCATGCGTCCGG]




>consensus_4813#0
ACGGGCTGAAACGAAGAAACATGTCCCTCTGCCTCCGTACGTGTGCACACTTTTAATTCA
TCAACAAGAAATGCTACACAACGTTGCAGGTGTTGTTCACGTACCTCATTAATATATTCA
ATTTCATTTGCTGAAGCATCCCAACGATTATTAATGATAAAAATATTTGGTTTGGATAAC
TTCTGACTGACTTTATGGAAGAAATCTTTCTCGGCTTGCATTAATGTTGACTCAGCATTA
GCAACAAGAATGAAAACATCAGCATCCAAACAGTGAAGATCAATCCATTTATCCATATCT
GGATCAACATTAATTCCTGGACTATCTAGTAGAACAACATCTTCACGTAACAGCCTACAA
TATGAACTTGGCCAGAATATTTTTAGTAGTGTGTCTGTAGAGAGTTTGACATTGCTTAAT
GCATGAGCCAACTGACCAACGGAATCAATAGGACGAGCCTGGTGAGAAATATCTGACGTT
TCTTTAGCATTGGTACCAGAGTCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCCCC
TGAATTTCAAGGAAACAACTGGTGGTGTGGCCCAAACCAGAAAGTAACAATTTTGAACCC
AACATTGCGTTAATAACAGTACTCTNTCCATTTGATGTTCTCCCAAAAAAAGCACATTTC
ATTTGATTACGAGCAATAATTTCCTGAATATTGCGGATTTTCTGTAAATGATGTTCAACT
TCAGCATGCAAGAGACTTGTCCCAAATCGATTCCCCGGCCGCCATGCGTCCGG

consensusID : consensus_4813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [TACCAGAATCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCCCCTGAATTTCAAGGAAACAACTGGTGGTGTGGCCCAAACCAGAAGGTAACAATTTTGAACCCAACATTGCGTTGATAACAGTACTCTTTCCATTTGATGTTCTATACGTAAAAATGTGAAAATTACAATACATCTGAATAATATCAAAACTGAGCATTAGAGAGAATAAAAAAACATGTTTACTGATTCCTGAAACGACTTTATCTTGATTATTTTACAAAGTGAACTCCAGTAGAGCCATTATCCTAATAAAGAGAAACTATTGGCCTAGTGTACAATATGGAGACCACAAAAATCATTTATCTACTACTAACTAGTGATAGCTTTATAAGTGATTAAATCTATTTAGGAAAGGACAATATTATGACTAGTGTATGATCATCAATCATACCGTGACCCACTCTGACACGAATAAGGATATCGTC]

[+] EMBL CD190785             [TACCAGAATCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCCCCTGAATTTCAAGGAAACAACTGGTGGTGTGGCCCAAACCAGAAGGTAACAATTTTGAACCCAACATTGCGTTGATAACAGTACTCTTTCCATTTGATGTTCTATACGTAAAAATGTGAAAATTACAATACATCTGAATAATATCAAAACTGAGCATTAGAGAGAATAAAAAAACATGTTTACTGATTCCTGAAACGACTTTATCTTGATTATTTTACAAAGTGAACTCCAGTAGAGCCATTATCCTAATAAAGAGAAACTATTGGCCTAGTGTACAATATGGAGACCACAAAAATCATTTATCTACTACTAACTAGTGATAGCTTTATAAGTGATTAAATCTATTTAGGAAAGGACAATATTATGACTAGTGTATGATCATCAATCATACCGTGACCCACTCTGACACGAATAAGGATATCGTC]




>consensus_4813#1
TACCAGAATCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCCCCTGAATTTCAAGGA
AACAACTGGTGGTGTGGCCCAAACCAGAAGGTAACAATTTTGAACCCAACATTGCGTTGA
TAACAGTACTCTTTCCATTTGATGTTCTATACGTAAAAATGTGAAAATTACAATACATCT
GAATAATATCAAAACTGAGCATTAGAGAGAATAAAAAAACATGTTTACTGATTCCTGAAA
CGACTTTATCTTGATTATTTTACAAAGTGAACTCCAGTAGAGCCATTATCCTAATAAAGA
GAAACTATTGGCCTAGTGTACAATATGGAGACCACAAAAATCATTTATCTACTACTAACT
AGTGATAGCTTTATAAGTGATTAAATCTATTTAGGAAAGGACAATATTATGACTAGTGTA
TGATCATCAATCATACCGTGACCCACTCTGACACGAATAAGGATATCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4813#0      ACGGGCTGAAACGAAGAAACATGTCCCTCTGCCTCCGTACGTGTGCACACTTTTAATTCA 60
consensus_4813#1      ------------------------------------------------------------
                                                                                  

consensus_4813#0      TCAACAAGAAATGCTACACAACGTTGCAGGTGTTGTTCACGTACCTCATTAATATATTCA 120
consensus_4813#1      ------------------------------------------------------------
                                                                                  

consensus_4813#0      ATTTCATTTGCTGAAGCATCCCAACGATTATTAATGATAAAAATATTTGGTTTGGATAAC 180
consensus_4813#1      ------------------TACCAGAATCAGCCATTAGAAGATATCCTGAGTCCTGATCCG 42
                                        * ***         * *   * * **  *  **   ***   

consensus_4813#0      TTCTGACTGACTTTATGGAAGAAATCTTTCTCGGCTTGCATTAATGTTGACTCAGCATTA 240
consensus_4813#1      TCCC--CTGAATTT--CAAGGAAACAACTGGTGGTGTGGCCCA------AACCAGAA--G 90
                      * *   **** ***    * ****    *   **  **    *      *  *** *   

consensus_4813#0      GCAACAAGAATGAAAACATCAGCATCCAAACAGTGAAGATCAATCCATTTATCCATATCT 300
consensus_4813#1      GTAACAATTTTGAACCCAACATTGCGTTGATAACAGTACTCTTTCCATTTGATGTTCTAT 150
                      * *****   ****  ** **        * *       **  *******     * * *

consensus_4813#0      GGATCAACAT-TAATTCCTGGACTATCTAGTAGAACAACATCTTCACGTAACAGCCTACA 359
consensus_4813#1      ACGTAAAAATGTGAAAATT--ACAATACATCTGAATAATATCAAAACTGAGCATTAGAGA 208
                         * ** ** * *    *  ** **  *   *** ** ***   **  * **    * *

consensus_4813#0      ATATGAACTTGGCCAGAATATTTTTAGTAGTGTGTCTGTAGAGAGTTTGACATTGCTTAA 419
consensus_4813#1      GAATAAA-------AAAACATGTTTACTGAT---TCCTGAAACGACTTTATCTTGATTAT 258
                        ** **       * ** ** **** *  *   **   * *    ** *  *** *** 

consensus_4813#0      TGCATGA-GCCAACTGACCAACGGAATCAATAGGACGAGCCTGGTGAGAAATATCTGACG 478
consensus_4813#1      TTTACAAAGTGAACT--CCAGTAGAGCCATTAT------CCTAATAAAGAGAAACT---- 306
                      *  *  * *  ****  ***   **  ** **       ***  * *  *  * **    

consensus_4813#0      TTTCTTTAGCATTGGTACCAGAGTCAGCCATTAGAAGATATCCTGAGTCCTGATCCGTCC 538
consensus_4813#1      ----------ATTGGC-CTAGTGT--ACAATATGGAGACCACAAAAATCATTTATCTACT 353
                                *****  * ** **   * **  * ***   *   * ** *    *  * 

consensus_4813#0      CCTGAATTTCAAGGAAACAACTGGTGGTGTGGCCCAAACCAGAAAGTAACAATTTTGAAC 598
consensus_4813#1      ACTAACTAGTGATAGCTTTATAAGTGAT-TAAATCTATTTAGGAAAGGACAATATTATGA 412
                       ** * *    *       *   *** * *    * *   ** **   ***** **    

consensus_4813#0      CCAACATTGCGTTAATAACAGTACTCTNTCCATTTGATGTTCTCCCAAAAAAAGCACATT 658
consensus_4813#1      CTAGTGTATGATCATCAATCATACCGTGACC------CACTCTGACACGAATAAGG-ATA 465
                      * *   *    * *  **   ***  *  **         ***  **  ** *    ** 

consensus_4813#0      TCATTTGATTACGAGCAATAATTTCCTGAATATTGCGGATTTTCTGTAAATGATGTTCAA 718
consensus_4813#1      TCGTC------------------------------------------------------- 470
                      ** *                                                        

consensus_4813#0      CTTCAGCATGCAAGAGACTTGTCCCAAATCGATTCCCCGGCCGCCATGCGTCCGG 773
consensus_4813#1      -------------------------------------------------------