cluster # 4816

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Schistosoma mansoni
cluster # 4816 cluster # 4816 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4816#0 length = 572 sequences # 2

consensus_4816#1 length = 502 sequences # 1

consensusID : consensus_4816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 572
fasta sequence

                              [CAGTCTTTTCACAGTTGCCTAGTCCAGTGCATCCCACTAAAACTCATCGTTTCGAACAGAGTGTTTCTGCACCACCTACTCCCTCTAATGTTCAGTCAGGGCAGAATTTTACAAATTATCTACATCAACCAGGGCATTCTTCTTCATCTTTAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCTTACCCTTTCCCCCATTCATTCTCTGTTGGTACCAACCAGTCGCTTGAACCTGCTATTACTGGGCGTCAATTTCCCAATGCTTCCATAAATCCTTCTTACCACCTACAACAGTTCCAACAATCGGCTTCCCAGCCCTTACCCTTGCCTCATCCACCTGTTCCATATGGTCAGTCGTTGTCTTACTTAGCACCTTCCCTAGTAACAGCTATGGGTAATG]

[+] EMBL CD148603             [CAGTCTTTTCACAGTTGCCTAGTCCAGTGCATCCCACTAAAACTCATCGTTTCGAACAGAGTGTTTCTGCACCACCTACTCCCTCTAATGTTCAGTCAGGGCAGAATTTTACAAATTATCTACATCAACCAGGGCATTCTTCTTCATCTTTAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAG                                                                                                                                                                                                                                                                          ]
[+] EMBL CD126860             [                                                                                                                                                                                                                                       TGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCTTACCCTTTCCCCCATTCATTCTCTGTTGGTACCAACCAGTCGCTTGAACCTGCTATTACTGGGCGTCAATTTCCCAATGCTTCCATAAATCCTTCTTACCACCTACAACAGTTCCAACAATCGGCTTCCCAGCCCTTACCCTTGCCTCATCCACCTGTTCCATATGGTCAGTCGTTGTCTTACTTAGCACCTTCCCTAGTAACAGCTATGGGTAATG]




>consensus_4816#0
CAGTCTTTTCACAGTTGCCTAGTCCAGTGCATCCCACTAAAACTCATCGTTTCGAACAGA
GTGTTTCTGCACCACCTACTCCCTCTAATGTTCAGTCAGGGCAGAATTTTACAAATTATC
TACATCAACCAGGGCATTCTTCTTCATCTTTAAGACGGTGGTGTTGGTTTGGCGATGGAG
AGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTT
GAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGA
CAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCTTACCC
TTTCCCCCATTCATTCTCTGTTGGTACCAACCAGTCGCTTGAACCTGCTATTACTGGGCG
TCAATTTCCCAATGCTTCCATAAATCCTTCTTACCACCTACAACAGTTCCAACAATCGGC
TTCCCAGCCCTTACCCTTGCCTCATCCACCTGTTCCATATGGTCAGTCGTTGTCTTACTT
AGCACCTTCCCTAGTAACAGCTATGGGTAATG

consensusID : consensus_4816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [GTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGCTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCG]

[+] EMBL CD148560             [GTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGCTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCG]




>consensus_4816#1
GTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGCTGAAGAGGTGTAGTTGTATCGAGAG
ATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTT
TTGTGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTT
CAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTA
GTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGAC
GGGAGTATAGTTTTTGTGGCGGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTT
TCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGT
AGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGA
CGGGAGTATAGTTTTTGTGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4816#0      ----------------------------------CAGTCTTTTCACAGTTGCCTAGTCCA 26
consensus_4816#1      GTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGCTGAAGAGGTGTAGTTGTATCGAGAG 60
                                                        * *         *****  * *    

consensus_4816#0      GTGCATCCCACTAAA---ACTCATCGTTTCGAACAGAGTGTTTCTGCACCACC-TACTCC 82
consensus_4816#1      ATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTT 120
                       **      *   *    * *  *   ** **    * **  *   *   *   ** *  

consensus_4816#0      CTCTAATGTTCAGTCAGGGCAGAATTTTACAAATTATCTACATCAACCAGGGCATTCTTC 142
consensus_4816#1      TTGTGGCGG-CGGCGGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTT 179
                       * *   *  * *    *** *               * * *       *   **   * 

consensus_4816#0      TTCATCTTTAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGT 202
consensus_4816#1      TCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGT 239
                      *        ***************************************************

consensus_4816#0      AGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGA 262
consensus_4816#1      AGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGA 299
                      ************************************************************

consensus_4816#0      CGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGT 322
consensus_4816#1      CGGGAGTATAGTTTTTGTGGCGGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGT 359
                      *********************** ************************************

consensus_4816#0      TTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCTTACCCTTTCCCCCATTCATTCTCTGTT 382
consensus_4816#1      TTCAGGAGCGAAGACGGTGGTGTTGGTTTGG----CGATGGAGAGAGTGGACTGTGAAGA 415
                      *******************************    *  *        *  * * *     

consensus_4816#0      GGTACCAACCAGTCGCTTGAACCTGCTATTACTGGGCGTCAATTTCCCAATGCTTCCATA 442
consensus_4816#1      GGTGT-----AGTTGTATCGAGA-GATGTGAGTGAGCG--AGTGTATTTTTGAGTTGGAG 467
                      ***       *** *  *  *   * * * * ** ***  * * *     **  *     

consensus_4816#0      AATCCTTCTTACCACCTACAACAGTTCCAACAATCGGCTTCCCAGCCCTTACCCTTGCCT 502
consensus_4816#1      TGTACTGACTAGACGGGAGTATAGTTTTTGTGGCG------------------------- 502
                        * **   **      *  * ****                                  

consensus_4816#0      CATCCACCTGTTCCATATGGTCAGTCGTTGTCTTACTTAGCACCTTCCCTAGTAACAGCT 562
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      ATGGGTAATG 572
consensus_4816#1      ----------