cluster # 4822

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Schistosoma mansoni
cluster # 4822 cluster # 4822 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4822#0 length = 443 sequences # 1

consensus_4822#1 length = 309 sequences # 2

consensusID : consensus_4822#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [ACCAACTTCCACCATTCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGACCACCATTCTCCAACCCAATTCGATGAAATACACATATATATATACATATGAATGATCAGATTTCAATAGTTTCAATATATATATATATATATATACGGTCCTTATATTGGATCCAATGTTTCAGTCTTCTTCTTCTCTGGAAGGTTCTTTTCTCTCTCTCTTCCCAGTAACTTTGTCTTCTGATCCAACTTATTT]

[+] EMBL CD064046             [ACCAACTTCCACCATTCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGACCACCATTCTCCAACCCAATTCGATGAAATACACATATATATATACATATGAATGATCAGATTTCAATAGTTTCAATATATATATATATATATATACGGTCCTTATATTGGATCCAATGTTTCAGTCTTCTTCTTCTCTGGAAGGTTCTTTTCTCTCTCTCTTCCCAGTAACTTTGTCTTCTGATCCAACTTATTT]




>consensus_4822#0
ACCAACTTCCACCATTCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGA
CACTAACGAAACAGGCACAACATGTACATCAAATCTGATACGTCGAGTACAATTACAGAT
TAATCAATAATACAAATCTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTAT
TATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGG
CCGCCGACCACCATTCTCCAACCCAATTCGATGAAATACACATATATATATACATATGAA
TGATCAGATTTCAATAGTTTCAATATATATATATATATATATACGGTCCTTATATTGGAT
CCAATGTTTCAGTCTTCTTCTTCTCTGGAAGGTTCTTTTCTCTCTCTCTTCCCAGTAACT
TTGTCTTCTGATCCAACTTATTT

consensusID : consensus_4822#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 309
fasta sequence

                              [AACTACTACTACTACTACTACTGTCAACACGAATTCTCCGCCTTCTTATTCTGAAGTTGTTTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGA]

[-] EMBL CD088278             [AACTACTACTACTACTACTACTGTCAACACGAATTCTCCGCCTTCTTATTCTGAAGTTGTTTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAG        ]
[+] EMBL BG931000             [                                             TTATTCTGAAGTAGTGTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACTAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGA]




>consensus_4822#1
AACTACTACTACTACTACTACTGTCAACACGAATTCTCCGCCTTCTTATTCTGAAGTTGT
TTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGA
CACTAACGAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGA
TTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATT
ATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATA
GGCCGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4822#0      ------------------------------------------------------------
consensus_4822#1      AACTACTACTACTACTACTACTGTCAACACGAATTCTCCGCCTTCTTATTCTGAAGTTGT 60
                                                                                  

consensus_4822#0      ACCAACTTCCACCATTCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGA 60
consensus_4822#1      TTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGA 120
                         * *     *** *********************************************

consensus_4822#0      CACTAACGAAACAGGCACAACATGTACATCAAATCT-GATACGTCGAGTACAATTACAGA 119
consensus_4822#1      CACTAACGAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGA 180
                      ************************************ ***********************

consensus_4822#0      TTAATCAATAATACAAATCT-GTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATT 178
consensus_4822#1      TTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATT 240
                      ******************** ***************************************

consensus_4822#0      ATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATA 238
consensus_4822#1      ATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATA 300
                      ************************************************************

consensus_4822#0      GGCCGCCGACCACCATTCTCCAACCCAATTCGATGAAATACACATATATATATACATATG 298
consensus_4822#1      GGCCGCCGA--------------------------------------------------- 309
                      *********                                                   

consensus_4822#0      AATGATCAGATTTCAATAGTTTCAATATATATATATATATATATACGGTCCTTATATTGG 358
consensus_4822#1      ------------------------------------------------------------
                                                                                  

consensus_4822#0      ATCCAATGTTTCAGTCTTCTTCTTCTCTGGAAGGTTCTTTTCTCTCTCTCTTCCCAGTAA 418
consensus_4822#1      ------------------------------------------------------------
                                                                                  

consensus_4822#0      CTTTGTCTTCTGATCCAACTTATTT 443
consensus_4822#1      -------------------------