These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 623 fasta sequence [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAAAACGCCGTATTGCAATG] [+] EMBL BF936516 [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAAAACGCCGTATTGCAATG] [+] EMBL AI975498 [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGA ] consensusID : consensus_4840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [ACGATTGTAACCTTATTATACGTCAATTTATCATGCATTTACAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATGGATTGTGAATTTGTTGGAGTTGGTTTTGAAGGAAAAGATGATGCATTAGCACGTGTTTCAATTGTAAATCAATTCGGTCATACCTTATTAGATACTTATGTACGTCCAGAAGAACGTGTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAATGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATANNATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG] [+] EMBL CD078713 [ACGATTGTAACCTTATTATACGTCAATTTATCATGCATTTACAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATGGATTGTGAATTTGTTGGAGTTGGTTTTGAAGGAAAAGATGATGCATTAGCACGTGTTTCAATTGTAAATCAATTCGGTCATACCTTATTAGATACTTATGTACGTCCAGAAGAACGTGTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAATGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATANNATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4840#0 TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCAT-AATAAACCAAAA 59 consensus_4840#1 ------------------------ACGATTGTAACCTTATTATACGTCAATTTATCATGC 36 * *** * ***** * ** * * *** * ** consensus_4840#0 AGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTC 119 consensus_4840#1 ATTTA-CAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCG 95 * * * ** * * ** * * ** * ** **** * *** * consensus_4840#0 AAATCAAAATATGATTCAAGGA-TACATTTAATAAAACAGAGGACTATACAACAA-CGAC 177 consensus_4840#1 AATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAA 155 ** **** * * ** * * * *** *** **** * *** * *** * consensus_4840#0 GAGCGGAATTTGTCT--CTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGA 235 consensus_4840#1 CAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTA 215 ** ****** *** ***** * * * * *** * ** * * consensus_4840#0 AACAATCCAGTTGACATCCGATAAACCAAAAG---CAATTCCTAATGCTTTCACAGGGTC 292 consensus_4840#1 --TGGTTT-GATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCC 272 * * *** * * * * * ** ****** *** * * consensus_4840#0 A-AGCGATAATTCTTGTGAA--CAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGA 349 consensus_4840#1 ACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATG 332 * * * * * * * ***** *** **** * * * * **** consensus_4840#0 GAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCAC 409 consensus_4840#1 GATTGTGAATTTGTTGGAGTTGGTTTTGAA-GGAAAAGATGATGCATTAGCACGTGTTTC 391 ** * ** ** * * ** ** * ** * * * * * consensus_4840#0 TGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAAC 469 consensus_4840#1 AATTGTAAATCAATTCGGTCATACCTTATTAGAT-ACTTATGTACGTCCAGAAG---AAC 447 * * ** *** * ** ** * ** * * ** * ** *** consensus_4840#0 TTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGC 529 consensus_4840#1 GT--GTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAA 505 * * * *** * ** ** * ** * * **** *** * consensus_4840#0 TTTAATTGCCAATTCACTGCAAGAT---CAATCAGCCACAACAAAATCTTTGGTGAAACT 586 consensus_4840#1 TGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATAN 565 * * ** ** * * *** ** ** ** *** *** consensus_4840#0 AACATCATTCGCAGGTCCAAAAC-GCCGTATTGCAATG 623 consensus_4840#1 NATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG 603 * ** * * * * * * * * * * ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||