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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 623 fasta sequence
[TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAAAACGCCGTATTGCAATG]
[+] EMBL BF936516 [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAAAACGCCGTATTGCAATG]
[+] EMBL AI975498 [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGA ]
consensusID : consensus_4840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[ACGATTGTAACCTTATTATACGTCAATTTATCATGCATTTACAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATGGATTGTGAATTTGTTGGAGTTGGTTTTGAAGGAAAAGATGATGCATTAGCACGTGTTTCAATTGTAAATCAATTCGGTCATACCTTATTAGATACTTATGTACGTCCAGAAGAACGTGTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAATGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATANNATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG]
[+] EMBL CD078713 [ACGATTGTAACCTTATTATACGTCAATTTATCATGCATTTACAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATGGATTGTGAATTTGTTGGAGTTGGTTTTGAAGGAAAAGATGATGCATTAGCACGTGTTTCAATTGTAAATCAATTCGGTCATACCTTATTAGATACTTATGTACGTCCAGAAGAACGTGTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAATGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATANNATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4840#0 TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCAT-AATAAACCAAAA 59
consensus_4840#1 ------------------------ACGATTGTAACCTTATTATACGTCAATTTATCATGC 36
* *** * ***** * ** * * *** * **
consensus_4840#0 AGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTC 119
consensus_4840#1 ATTTA-CAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCG 95
* * * ** * * ** * * ** * ** **** * *** *
consensus_4840#0 AAATCAAAATATGATTCAAGGA-TACATTTAATAAAACAGAGGACTATACAACAA-CGAC 177
consensus_4840#1 AATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAA 155
** **** * * ** * * * *** *** **** * *** * *** *
consensus_4840#0 GAGCGGAATTTGTCT--CTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGA 235
consensus_4840#1 CAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTA 215
** ****** *** ***** * * * * *** * ** * *
consensus_4840#0 AACAATCCAGTTGACATCCGATAAACCAAAAG---CAATTCCTAATGCTTTCACAGGGTC 292
consensus_4840#1 --TGGTTT-GATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCC 272
* * *** * * * * * ** ****** *** * *
consensus_4840#0 A-AGCGATAATTCTTGTGAA--CAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGA 349
consensus_4840#1 ACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATG 332
* * * * * * * ***** *** **** * * * * ****
consensus_4840#0 GAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCAC 409
consensus_4840#1 GATTGTGAATTTGTTGGAGTTGGTTTTGAA-GGAAAAGATGATGCATTAGCACGTGTTTC 391
** * ** ** * * ** ** * ** * * * * *
consensus_4840#0 TGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAAC 469
consensus_4840#1 AATTGTAAATCAATTCGGTCATACCTTATTAGAT-ACTTATGTACGTCCAGAAG---AAC 447
* * ** *** * ** ** * ** * * ** * ** ***
consensus_4840#0 TTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGC 529
consensus_4840#1 GT--GTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAA 505
* * * *** * ** ** * ** * * **** *** *
consensus_4840#0 TTTAATTGCCAATTCACTGCAAGAT---CAATCAGCCACAACAAAATCTTTGGTGAAACT 586
consensus_4840#1 TGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATAN 565
* * ** ** * * *** ** ** ** *** ***
consensus_4840#0 AACATCATTCGCAGGTCCAAAAC-GCCGTATTGCAATG 623
consensus_4840#1 NATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG 603
* ** * * * * * * * * * * ** ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||