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Schistosoma mansoni
cluster # 4840 cluster # 4840       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4840#0 length = 623 sequences # 2  
consensus_4840#1 length = 603 sequences # 1  

consensusID : consensus_4840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 623
fasta sequence
                              [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAAAACGCCGTATTGCAATG]

[+] EMBL BF936516             [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAAAACGCCGTATTGCAATG]
[+] EMBL AI975498             [TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAAGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCAAATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAGCGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAATCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATAATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGA                                                                                                                                                                                                    ]


>consensus_4840#0 TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCATAATAAACCAAAAA GTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTCA AATCAAAATATGATTCAAGGATACATTTAATAAAACAGAGGACTATACAACAACGACGAG CGGAATTTGTCTCTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGAAACAA TCCAGTTGACATCCGATAAACCAAAAGCAATTCCTAATGCTTTCACAGGGTCAAGCGATA ATTCTTGTGAACAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGAGAAAATATCTT CAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACA AATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTAT ATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCA ATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAG GTCCAAAACGCCGTATTGCAATG



consensusID : consensus_4840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence
                              [ACGATTGTAACCTTATTATACGTCAATTTATCATGCATTTACAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATGGATTGTGAATTTGTTGGAGTTGGTTTTGAAGGAAAAGATGATGCATTAGCACGTGTTTCAATTGTAAATCAATTCGGTCATACCTTATTAGATACTTATGTACGTCCAGAAGAACGTGTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAATGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATANNATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG]

[+] EMBL CD078713             [ACGATTGTAACCTTATTATACGTCAATTTATCATGCATTTACAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCGAATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATGGATTGTGAATTTGTTGGAGTTGGTTTTGAAGGAAAAGATGATGCATTAGCACGTGTTTCAATTGTAAATCAATTCGGTCATACCTTATTAGATACTTATGTACGTCCAGAAGAACGTGTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAATGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATANNATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG]


>consensus_4840#1 ACGATTGTAACCTTATTATACGTCAATTTATCATGCATTTACAGATGTTTGTCATCATAT CGTAATACTGTTGACTTTTTAATTTTGTTAGGCCGAATAAAAAACCTAAATCCTTCACTG TAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAACTT CAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGCTT TAATTGCCAATTCACTGCAAGATCAATCAGCCACAACAAAATCTTTGGTGAAACTAACAT CATTCGCAGGTCCAACACGCCGTATTGCAATGGATTGTGAATTTGTTGGAGTTGGTTTTG AAGGAAAAGATGATGCATTAGCACGTGTTTCAATTGTAAATCAATTCGGTCATACCTTAT TAGATACTTATGTACGTCCAGAAGAACGTGTTGTTGATTATCGAACAAAAGTCTCTGGTA TAAGACCTCGTGATTTACGGAAAAATGGATCAGCTCGACCATTCAATGATGTACACAAAG AAGTTGCAGAATTGANTAAGAATANNATATTAGTTGGACATTCTATCCTGAAGGATCTTA AAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4840#0      TGTGATTTGTTGCATGTTCTTTTATCAATTTTCACCTTCTAATGCAT-AATAAACCAAAA 59
consensus_4840#1      ------------------------ACGATTGTAACCTTATTATACGTCAATTTATCATGC 36
                                               * *** * ***** * ** * * ***  * **   

consensus_4840#0      AGTAATCACAATCATAGCAAAGAAAAGAAAAATCATTTACTTATAAATAAGAAAAAATTC 119
consensus_4840#1      ATTTA-CAGATGTTTGTCATCATATCGTAATACTGTTGACTTTTTAATTTTGTTAGGCCG 95
                      * * * ** *    *  **    *  * ** *   ** **** * ***      *     

consensus_4840#0      AAATCAAAATATGATTCAAGGA-TACATTTAATAAAACAGAGGACTATACAACAA-CGAC 177
consensus_4840#1      AATAAAAAACCTAAATCCTTCACTGTAGATAACAAATCAGAAAATGATAAATCAAATCAA 155
                      **   ****  * * **    * *  *  *** *** ****  *  *** * ***   * 

consensus_4840#0      GAGCGGAATTTGTCT--CTCGTACTCAAAAGCAAAAGACCAATACAACCAATCGGACGGA 235
consensus_4840#1      CAGTATAATTTGGAAAACTCAACTTCAAATTTATATTCTTCAAATAACACACGAGAAGTA 215
                       **   ******     ***    *****   * *      * * ***  *   ** * *

consensus_4840#0      AACAATCCAGTTGACATCCGATAAACCAAAAG---CAATTCCTAATGCTTTCACAGGGTC 292
consensus_4840#1      --TGGTTT-GATGATGTACCACAGGCTTTAATTGCCAATTCACTGCAAGATCAATCAGCC 272
                           *   * ***  * * * *  *   **    ******         ***    * *

consensus_4840#0      A-AGCGATAATTCTTGTGAA--CAACCATTTTCGAAATTGGACAGAGATGTATCAGTCGA 349
consensus_4840#1      ACAACAAAATCTTTGGTGAAACTAACATCATTCGCAGGTCCAACACGCCGTATTGCAATG 332
                      * * * * *  * * *****   ***    **** *  *  *    *  ****       

consensus_4840#0      GAAAATATCTTCAGTGAAATCTCATTCGATTAGGCCGAATAAAAAACCTAAATCCTTCAC 409
consensus_4840#1      GATTGTGAATTTGTTGGAGTTGGTTTTGAA-GGAAAAGATGATGCATTAGCACGTGTTTC 391
                      **   *   **   ** * *    ** **   *     ** *   *     *    *  *

consensus_4840#0      TGTAGATAACAAATCAGAAAATGATAAATCAAATCAACAGTATAATTTGGAAAACTCAAC 469
consensus_4840#1      AATTGTAAATCAATTCGGTCATACCTTATTAGAT-ACTTATGTACGTCCAGAAG---AAC 447
                        * *  **  ***  *   **     ** * ** *    * **  *    **    ***

consensus_4840#0      TTCAAATTTATATTCTTCAAATAACACACGAGAAGTATGGTTTGATGATGTACCACAGGC 529
consensus_4840#1      GT--GTTGTTGATTATCGAACAAAAGTCTCTGGTATAAGACCTCGTGATTTACGGAAAAA 505
                       *    * *  *** *  **  **       *   ** *   *  **** ***   *   

consensus_4840#0      TTTAATTGCCAATTCACTGCAAGAT---CAATCAGCCACAACAAAATCTTTGGTGAAACT 586
consensus_4840#1      TGGATCAGCTCGACCATTCAATGATGTACACAAAGAAGTTGCAGAATTGANTAAGAATAN 565
                      *  *   **     ** *  * ***   **   **      ** ***       ***   

consensus_4840#0      AACATCATTCGCAGGTCCAAAAC-GCCGTATTGCAATG 623
consensus_4840#1      NATATTAGTTGGACATTCTATCCTGAAGGATCTTAAAG 603
                       * ** * * * *  * * *  * *  * **   ** *




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)