cluster # 4841

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Schistosoma mansoni
cluster # 4841 cluster # 4841 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4841#0 length = 382 sequences # 2

consensus_4841#1 length = 247 sequences # 1

consensusID : consensus_4841#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 382
fasta sequence

                              [GGTAAATCACACTGAAGAACTCTTCAATCGATCAGCTCCACTCAACCCACACGACATCGATGCAGAACACACACACATTCCTATAGATGCCATTCCATCAACGATAGAAATCAGAATGGCCAGCCATCAGACAAATCAAGAGTGGGAAATAGGCTGGATCAGACAACATACCAGACGAAACACTGAAGCCAAATATAGAAGCAACTGCAAACATACTCCACAGTCTATTCAGTTAGATTTGAGAGGATGAACGAGTGTTGAATAACTGGAAAGAACGATACCTTATCAATATATCAAACAAAGGAGATCTTGATATGTGTGAGGACCACAGAGGCATCACAGCACTATCAGTACTGGGAAAGTTTACCAACAAGAAAAGGNT]

[+] EMBL CD152808             [GGTAAATCACACTGAAGAACTCTTCAATCGATCAGCTCCACTCAACCCACACGACATCGATGCAGAACACACACACATTCCTATAGATGCCATTCCATCAACGATAGAAATCAGAATGGCCAGCCATCAGACAAATCAAGAGTGGGAAATAGGCTGGATCAGACAACATACCAGACGAAACACTGAAGCCAAATATAGAAGCAACTGCAAACATACTCCACAGTCTATTCAGTTAGATTTGAGAGGATGAACGAGTGTTGAATAACTGGAAAGAACGATACCTTATCAATATATCAAACAAAGGAGATCTTGATATGTGTGAGGACCACAGAGGCATCACAGCACTATCAGTACTGGGAAAGTTTACCAACAAGAAAAGGNT]
[+] EMBL CD145130             [GGTAAATCACACTGAAGAACTCTTCAATCGATCAGCTCCACTCAACCCACACGACATCGATGCAGAACACACACACATTCCTATAGATGTCATTCCATCAACGATAGAAATCAGAATGGCCAGCCATCAGACAAATCAAGAGTGGGAAATAGGCTGGATCAGACAACATACCAGACGAAACACTGAAGCCAAACATAGAAGCAACTGCAAACATACT                                                                                                                                                                     ]




>consensus_4841#0
GGTAAATCACACTGAAGAACTCTTCAATCGATCAGCTCCACTCAACCCACACGACATCGA
TGCAGAACACACACACATTCCTATAGATGCCATTCCATCAACGATAGAAATCAGAATGGC
CAGCCATCAGACAAATCAAGAGTGGGAAATAGGCTGGATCAGACAACATACCAGACGAAA
CACTGAAGCCAAATATAGAAGCAACTGCAAACATACTCCACAGTCTATTCAGTTAGATTT
GAGAGGATGAACGAGTGTTGAATAACTGGAAAGAACGATACCTTATCAATATATCAAACA
AAGGAGATCTTGATATGTGTGAGGACCACAGAGGCATCACAGCACTATCAGTACTGGGAA
AGTTTACCAACAAGAAAAGGNT

consensusID : consensus_4841#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [CAAGTCAATCACCGAGATTCAAGAACAGAGGAACAAGTGAGTAGAGCACTTTGAAGAACTCTTCAACCGATCAGCTTCACTCAACCCACACGACATCCATGCAGAACACACACATATTCCTATAGATGTCACTCCATCAACGATAGAAGAAATCAGAATGGCCAGCCATCAGACAAATCAAGAGTGGAAATAGACTGGACCAGACAATATACAAGACGAAACACTGAAGTCAAACATAGAAGCAACT]

[+] EMBL CD086181             [CAAGTCAATCACCGAGATTCAAGAACAGAGGAACAAGTGAGTAGAGCACTTTGAAGAACTCTTCAACCGATCAGCTTCACTCAACCCACACGACATCCATGCAGAACACACACATATTCCTATAGATGTCACTCCATCAACGATAGAAGAAATCAGAATGGCCAGCCATCAGACAAATCAAGAGTGGAAATAGACTGGACCAGACAATATACAAGACGAAACACTGAAGTCAAACATAGAAGCAACT]




>consensus_4841#1
CAAGTCAATCACCGAGATTCAAGAACAGAGGAACAAGTGAGTAGAGCACTTTGAAGAACT
CTTCAACCGATCAGCTTCACTCAACCCACACGACATCCATGCAGAACACACACATATTCC
TATAGATGTCACTCCATCAACGATAGAAGAAATCAGAATGGCCAGCCATCAGACAAATCA
AGAGTGGAAATAGACTGGACCAGACAATATACAAGACGAAACACTGAAGTCAAACATAGA
AGCAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4841#0      ---------------------------------------GGTAAATCACACTGAAGAACT 21
consensus_4841#1      CAAGTCAATCACCGAGATTCAAGAACAGAGGAACAAGTGAGTAGAGCACTTTGAAGAACT 60
                                                              *** * ***  *********

consensus_4841#0      CTTCAATCGATCAGCTCCACTCAACCCACACGACATCGATGCAGAACACACACACATTCC 81
consensus_4841#1      CTTCAACCGATCAGCTTCACTCAACCCACACGACATCCATGCAGAACACACACATATTCC 120
                      ****** ********* ******************** **************** *****

consensus_4841#0      TATAGATGCCATTCCATCAACGATAGAA---ATCAGAATGGCCAGCCATCAGACAAATCA 138
consensus_4841#1      TATAGATGTCACTCCATCAACGATAGAAGAAATCAGAATGGCCAGCCATCAGACAAATCA 180
                      ******** ** ****************   *****************************

consensus_4841#0      AGAGTGGGAAATAGGCTGGATCAGACAACATACCAGACGAAACACTGAAGCCAAATATAG 198
consensus_4841#1      AGAGTGG-AAATAGACTGGACCAGACAATATACAAGACGAAACACTGAAGTCAAACATAG 239
                      ******* ****** ***** ******* **** **************** **** ****

consensus_4841#0      AAGCAACTGCAAACATACTCCACAGTCTATTCAGTTAGATTTGAGAGGATGAACGAGTGT 258
consensus_4841#1      AAGCAACT---------------------------------------------------- 247
                      ********                                                    

consensus_4841#0      TGAATAACTGGAAAGAACGATACCTTATCAATATATCAAACAAAGGAGATCTTGATATGT 318
consensus_4841#1      ------------------------------------------------------------
                                                                                  

consensus_4841#0      GTGAGGACCACAGAGGCATCACAGCACTATCAGTACTGGGAAAGTTTACCAACAAGAAAA 378
consensus_4841#1      ------------------------------------------------------------
                                                                                  

consensus_4841#0      GGNT 382
consensus_4841#1      ----