cluster # 4854

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Schistosoma mansoni
cluster # 4854 cluster # 4854 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4854#0 length = 467 sequences # 2

consensus_4854#1 length = 459 sequences # 1

consensusID : consensus_4854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 467
fasta sequence

                              [AATGTGCTGATGATAAATGACAAATACGTGAGTTTTTGGACGATAATAATTTGCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGTTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAATGCACTGTGGATTTATGGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATTGGACATCTCCTGGAATTGACAATTTAGGATGAATATGACTACTTAACGAGTGGGCTGACATAAGTAAATCACGTTCATCTGATTTATTTGCCGACTCCATGTGACTGGTACTTGGTTCAGAACCACCACAGCATAAGATGCATGGTCCAATAAATGGGGGAATGCCAGAGCATTTA]

[+] EMBL CD114375             [AATGTGCTGATGATAAATGACAAATACGTGAGTTTTTGGACGATAATAATTTGCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGTTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAATGCACTGTGGATTTATGGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATTG                                                                                                                                                                               ]
[+] EMBL CD069672             [                   ACAAATACGTGAGTTTTTGGACGATAATAATTTGCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGTTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAATGCACTGTGGATTTATGGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATTGGACATCTCCTGGAATTGACAATTTAGGATGAATATGACTACTTAACGAGTGGGCTGACATAAGTAAATCACGTTCATCTGATTTATTTGCCGACTCCATGTGACTGGTACTTGGTTCAGAACCACCACAGCATAAGATGCATGGTCCAATAAATGGGGGAATGCCAGAGCATTTA]




>consensus_4854#0
AATGTGCTGATGATAAATGACAAATACGTGAGTTTTTGGACGATAATAATTTGCGCTTGC
GTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGTTAGTTGAT
TGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCT
GAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAATGCACTGTGGATTTATGGGGTCGGA
AATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATTGGACATCTC
CTGGAATTGACAATTTAGGATGAATATGACTACTTAACGAGTGGGCTGACATAAGTAAAT
CACGTTCATCTGATTTATTTGCCGACTCCATGTGACTGGTACTTGGTTCAGAACCACCAC
AGCATAAGATGCATGGTCCAATAAATGGGGGAATGCCAGAGCATTTA

consensusID : consensus_4854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [TTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCAGCTCTAAACAGTCTTGGTTATACACTCGTTCTGTAACGCATTCAAACTGGCATTGGTTATGTACAGAAATAAAACATGCTGAAAAATGTTTACAAAATCTTTATATGTTAAAAAATAACTCCGATCCGGAAAAGTTATCTCAGTATCAATGTAATACTAATAACGCTGAAAATGATGCAGAAGTTAGCTGTTCTCGTACATCTCCATACATAAATACCAAACGGAAACGACATACTTATCACAATCTCTCATCACCTAAATGCGCTAGTATAATACAGGAACTACACAAACATTCTCGTGGTGATCCTCACATTAAATGCTCTTGCNTTCCCCCATTTATTGGACCATGCATCTTATGCTGTGGTGGTT]

[+] EMBL CD114382             [TTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCAGCTCTAAACAGTCTTGGTTATACACTCGTTCTGTAACGCATTCAAACTGGCATTGGTTATGTACAGAAATAAAACATGCTGAAAAATGTTTACAAAATCTTTATATGTTAAAAAATAACTCCGATCCGGAAAAGTTATCTCAGTATCAATGTAATACTAATAACGCTGAAAATGATGCAGAAGTTAGCTGTTCTCGTACATCTCCATACATAAATACCAAACGGAAACGACATACTTATCACAATCTCTCATCACCTAAATGCGCTAGTATAATACAGGAACTACACAAACATTCTCGTGGTGATCCTCACATTAAATGCTCTTGCNTTCCCCCATTTATTGGACCATGCATCTTATGCTGTGGTGGTT]




>consensus_4854#1
TTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCT
CCAATGGCTGAAGGCAAGTTGGTTTGTCCAGCTCTAAACAGTCTTGGTTATACACTCGTT
CTGTAACGCATTCAAACTGGCATTGGTTATGTACAGAAATAAAACATGCTGAAAAATGTT
TACAAAATCTTTATATGTTAAAAAATAACTCCGATCCGGAAAAGTTATCTCAGTATCAAT
GTAATACTAATAACGCTGAAAATGATGCAGAAGTTAGCTGTTCTCGTACATCTCCATACA
TAAATACCAAACGGAAACGACATACTTATCACAATCTCTCATCACCTAAATGCGCTAGTA
TAATACAGGAACTACACAAACATTCTCGTGGTGATCCTCACATTAAATGCTCTTGCNTTC
CCCCATTTATTGGACCATGCATCTTATGCTGTGGTGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4854#0      -------AATGTGCTGATGATAAATGACAAATACGTGAGTTTTTGGACGATA-ATAATTT 52
consensus_4854#1      TTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCT 60
                             * **   ***     **    * **  ** ** * * ** ****  ***   *

consensus_4854#0      GCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGT 112
consensus_4854#1      CCAATGGCTGAA--GGCAAGTTGGTTTGTCCAGCTCTAAACAGTC--TTGGTTATACACT 116
                       *  * **  **  ** ** **  * * *          *** *    ***** ***  *

consensus_4854#0      TAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTC 172
consensus_4854#1      CGTT---CTGTAACGCAT-TCAAACTGGCATTGGTTATGTACAG---AAATAAAACATGC 169
                         *    ** *  *  *   ** **   **  **** **  **    * * * *    *

consensus_4854#0      CAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAA-TGCACTGTGGATTTAT 231
consensus_4854#1      TGAAAAATGTTTACAAAATC-TTTAT---ATGTTAAAAAATAACTCCGATCCGGAAAAGT 225
                        *    **    ***  *  *** *     * *   * * ** * *  *  ***    *

consensus_4854#0      GGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATT 291
consensus_4854#1      TATCTCAGTATCAATGTAATACTAATAACGCTGAAAATGATGCAGAAGTTAGCTGTTCTC 285
                          ** * *   *  * **     *   **   *   *** *  **   **   *  * 

consensus_4854#0      GGACATCTCCTGGAATTGACAATTTAGGATGAATATGAC-TACTTAACGAGTGGGCTGAC 350
consensus_4854#1      GTACATCTCCATACATAAATA---CCAAACGGAAACGACATACTTATC--ACAATCTCTC 340
                      * ********    **  * *       * * * * *** ****** *       **  *

consensus_4854#0      ATAAGTAAATCACGTTCATCTGATTTA-----TTTGCCGAC-TCCATGTGACTGGTACTT 404
consensus_4854#1      ATCACCTAAATGCGCTAGTATAATACAGGAACTACACAAACATTCTCGTGG-TGATCCTC 399
                      ** *   **   ** *  * * **  *     *   *  ** * *  ***  ** * ** 

consensus_4854#0      GGTTCAGA-ACCACCACAGCATAAGATGCATGGTCCAATAAATGGGGGAATGCCAGAGCA 463
consensus_4854#1      ACATTAAATGCTCTTGCNTTCCCCCATTTATTGGACCATGCATCTT---ATGCTGTGGTG 456
                         * * *  *     *        **  ** *  * **  **      ****    *  

consensus_4854#0      TTTA 467
consensus_4854#1      GTT- 459
                       **