cluster # 4862

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Schistosoma mansoni
cluster # 4862 cluster # 4862 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4862#0 length = 179 sequences # 2

consensus_4862#1 length = 102 sequences # 1

consensusID : consensus_4862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 179
fasta sequence

                              [CAGGTGCTGGCT-C-GATTCATAAAGTGGGGGCCGGTATATGGCATACAGATTCATAAAGTGGCCACGAGTCACGGGCCGGCATATGGCATACAGATTCATGAAGTGAAAGAGCCGAAGCAGATTGTTGGTAGGTGATTTGCCTACCATGATGATAACGGGTGACTCGGGAATGCCAGTGA]

[+] EMBL CD126053             [CAGGTGCTGGCT C GATTCATAAAGTGGGGGCCGGTATATGGCATACAGATTCATAAAGTGGCCACGAGTCACGGGCCGGCATATGGCATACAGATTCATGAAGTGAAAGAGCCGAAGCAGATTGTTGGTAGGTGATTTGCCTACCATGATGATAACGGGTGACTCGGGAATGCCAGTGA]
[+] EMBL CD167647             [      ccGGCTACAGATTCATAAAGTGGGGGCCGGTATATGGCATACAGATTCATAAAGTGGCCACGAGTCACGGGCCGGCATATGGCATACAGATTCATGAAGTGAAAGAGCCGAAGCAGATTGTTGGTAGGTGATTTGCCTACCATGATGATAACGGGTGACTC              ]




>consensus_4862#0
CAGGTGCTGGCTCGATTCATAAAGTGGGGGCCGGTATATGGCATACAGATTCATAAAGTG
GCCACGAGTCACGGGCCGGCATATGGCATACAGATTCATGAAGTGAAAGAGCCGAAGCAG
ATTGTTGGTAGGTGATTTGCCTACCATGATGATAACGGGTGACTCGGGAATGCCAGTGA

consensusID : consensus_4862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [TACCACGAGTCAGGGCCGGTACAGATTCATAAAGTGGGGGCCGGCATATGGCATACAGATTCATAAAGTGGCCACGAGTCACGGGCTGGCATATGGCATACA]

[+] EMBL CD167703             [TACCACGAGTCAGGGCCGGTACAGATTCATAAAGTGGGGGCCGGCATATGGCATACAGATTCATAAAGTGGCCACGAGTCACGGGCTGGCATATGGCATACA]




>consensus_4862#1
TACCACGAGTCAGGGCCGGTACAGATTCATAAAGTGGGGGCCGGCATATGGCATACAGAT
TCATAAAGTGGCCACGAGTCACGGGCTGGCATATGGCATACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4862#0      ----------CAGGTGCTGGCTCGATTCATAAAGTGGGGGCCGGTATATGGCATACAGAT 50
consensus_4862#1      TACCACGAGTCAGGGCCGGTACAGATTCATAAAGTGGGGGCCGGCATATGGCATACAGAT 60
                                ****  * *    ********************* ***************

consensus_4862#0      TCATAAAGTGGCCACGAGTCACGGGCCGGCATATGGCATACAGATTCATGAAGTGAAAGA 110
consensus_4862#1      TCATAAAGTGGCCACGAGTCACGGGCTGGCATATGGCATACA------------------ 102
                      ************************** ***************                  

consensus_4862#0      GCCGAAGCAGATTGTTGGTAGGTGATTTGCCTACCATGATGATAACGGGTGACTCGGGAA 170
consensus_4862#1      ------------------------------------------------------------
                                                                                  

consensus_4862#0      TGCCAGTGA 179
consensus_4862#1      ---------