cluster # 4866

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Schistosoma mansoni
cluster # 4866 cluster # 4866 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4866#0 length = 584 sequences # 2

consensus_4866#1 length = 390 sequences # 1

consensusID : consensus_4866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 584
fasta sequence

                              [GGTCATATAGCTGAGTATTTACTTCTCTGGCCAAGAAAAGTAAGTTGGTAATGTCTCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTTGGTAAAAGTGCAGAAGAATCACTCATAACTGCTCGTGAAGCGGAGATAATGTGGGAGTTAGAGGCTGAGCAATATAAGCCAGCAGAACGATTGACAGAAAATGATAAATCTGAAAATTTAAAGTCCGCTTGGCGTGTATTAGATAAACCTTTGTACTTATTGGTCCAATCCCCGAAAAATGTATCTAGTGGATGGAATCTTCCGATTGCACCAATATCCGATGGAAAAAATTTAAGACAGGTCGCAGATTCAATAGCGACAAGTTTATTACCATCAAGAGCTAAATGGTGTATATTTGGTAATACACCA]

[+] EMBL AI977397             [GGTCATATAGCTGAGTATTTACTTCTCTGGCCAAGAAAAGTAAGTTGGTAATGTCTCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTTGGTAAAAGTGCAGAAGAATCACTCATAACTGCTCGTGAAGCGGAGATAATGTGGGAGTTAGAGGCTGAGCAATATAAGCCAGCAGAACGATTGACAGAAAATGATAAATCTGAAAATTTAAAGTCCGCTTGGCGTGTATTAGATAAACCTTTGTACTTATTGGTCCAATCCCCGAAAAATGTATCTAGTGGATGGAATCTTCCGATTGCACCAATATCCGATGGAAAAAATTTAAGACAGGTCGCAGATTCAATAGCGACAAGTTTATTACCATCAAGAGCTAAATGGTGTATATTTGGTAATACACCA]
[-] EMBL CD141842             [                                                         GTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGAATTGCTAGTGCC                                                                                                                                                                                                                                                                                                                                    ]




>consensus_4866#0
GGTCATATAGCTGAGTATTTACTTCTCTGGCCAAGAAAAGTAAGTTGGTAATGTCTCGTT
CTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTC
GACCCGCAGTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTG
GAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAA
CTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTTGGTAAAAGTGCAGAAGAATCACTCA
TAACTGCTCGTGAAGCGGAGATAATGTGGGAGTTAGAGGCTGAGCAATATAAGCCAGCAG
AACGATTGACAGAAAATGATAAATCTGAAAATTTAAAGTCCGCTTGGCGTGTATTAGATA
AACCTTTGTACTTATTGGTCCAATCCCCGAAAAATGTATCTAGTGGATGGAATCTTCCGA
TTGCACCAATATCCGATGGAAAAAATTTAAGACAGGTCGCAGATTCAATAGCGACAAGTT
TATTACCATCAAGAGCTAAATGGTGTATATTTGGTAATACACCA

consensusID : consensus_4866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [AGTCATGATGTGTGTTGTTGTGGGCGTTTCGGTGTGCGTGGATAGGGTAGTCTGTGTGGTAAACCACTGCCATGGAATGCTAAACGCCCTCCCTTTATGCGGGAGTTGTGCTGAGTGTGGTTGTCGATCCGCGCCATGGCGGTCGCGTGAATTCGATTAGGGCGACTCCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAATCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAACCTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTCGCC]

[-] EMBL CD141638             [AGTCATGATGTGTGTTGTTGTGGGCGTTTCGGTGTGCGTGGATAGGGTAGTCTGTGTGGTAAACCACTGCCATGGAATGCTAAACGCCCTCCCTTTATGCGGGAGTTGTGCTGAGTGTGGTTGTCGATCCGCGCCATGGCGGTCGCGTGAATTCGATTAGGGCGACTCCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAATCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAACCTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTCGCC]




>consensus_4866#1
AGTCATGATGTGTGTTGTTGTGGGCGTTTCGGTGTGCGTGGATAGGGTAGTCTGTGTGGT
AAACCACTGCCATGGAATGCTAAACGCCCTCCCTTTATGCGGGAGTTGTGCTGAGTGTGG
TTGTCGATCCGCGCCATGGCGGTCGCGTGAATTCGATTAGGGCGACTCCGTTCTCTGGTT
GTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCA
GTTATTGCACCAGAATTGAAATCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTC
GAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAACCTAAAAGA
ATTGCTAGTGCCCTTTCAAAAGGAGTCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4866#0      ------------------------------------------------------------
consensus_4866#1      AGTCATGATGTGTGTTGTTGTGGGCGTTTCGGTGTGCGTGGATAGGGTAGTCTGTGTGGT 60
                                                                                  

consensus_4866#0      -------------------------------------------------GGTCA-TATAG 10
consensus_4866#1      AAACCACTGCCATGGAATGCTAAACGCCCTCCCTTTATGCGGGAGTTGTGCTGAGTGTGG 120
                                                                       * * * * * *

consensus_4866#0      CTGAGTATTTACTTCTC--TGGCCAAGAAAAGTAAGTTGGTAATGTCTCGTTCTCTGGTT 68
consensus_4866#1      TTGTCGATCCGCGCCATGGCGGTCGCGTGAATTCGATTAGGGCGACTCCGTTCTCTGGTT 180
                       **   **   *  *     ** *  *  ** *   ** *        ************

consensus_4866#0      GTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCA 128
consensus_4866#1      GTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCA 240
                      ************************************************************

consensus_4866#0      GTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTC 188
consensus_4866#1      GTTATTGCACCAGAATTGAAATCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTC 300
                      ********************* **************************************

consensus_4866#0      GAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGA 248
consensus_4866#1      GAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAACCTAAAAGA 360
                      *************************************************** ********

consensus_4866#0      ATTGCTAGTGCCCTTTCAAAAGGAGTTGGTAAAAGTGCAGAAGAATCACTCATAACTGCT 308
consensus_4866#1      ATTGCTAGTGCCCTTTCAAAAGGAGTCGCC------------------------------ 390
                      ************************** *                                

consensus_4866#0      CGTGAAGCGGAGATAATGTGGGAGTTAGAGGCTGAGCAATATAAGCCAGCAGAACGATTG 368
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      ACAGAAAATGATAAATCTGAAAATTTAAAGTCCGCTTGGCGTGTATTAGATAAACCTTTG 428
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TACTTATTGGTCCAATCCCCGAAAAATGTATCTAGTGGATGGAATCTTCCGATTGCACCA 488
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      ATATCCGATGGAAAAAATTTAAGACAGGTCGCAGATTCAATAGCGACAAGTTTATTACCA 548
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TCAAGAGCTAAATGGTGTATATTTGGTAATACACCA 584
consensus_4866#1      ------------------------------------