These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence [GGTCATATAGCTGAGTATTTACTTCTCTGGCCAAGAAAAGTAAGTTGGTAATGTCTCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTTGGTAAAAGTGCAGAAGAATCACTCATAACTGCTCGTGAAGCGGAGATAATGTGGGAGTTAGAGGCTGAGCAATATAAGCCAGCAGAACGATTGACAGAAAATGATAAATCTGAAAATTTAAAGTCCGCTTGGCGTGTATTAGATAAACCTTTGTACTTATTGGTCCAATCCCCGAAAAATGTATCTAGTGGATGGAATCTTCCGATTGCACCAATATCCGATGGAAAAAATTTAAGACAGGTCGCAGATTCAATAGCGACAAGTTTATTACCATCAAGAGCTAAATGGTGTATATTTGGTAATACACCA] [+] EMBL AI977397 [GGTCATATAGCTGAGTATTTACTTCTCTGGCCAAGAAAAGTAAGTTGGTAATGTCTCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTTGGTAAAAGTGCAGAAGAATCACTCATAACTGCTCGTGAAGCGGAGATAATGTGGGAGTTAGAGGCTGAGCAATATAAGCCAGCAGAACGATTGACAGAAAATGATAAATCTGAAAATTTAAAGTCCGCTTGGCGTGTATTAGATAAACCTTTGTACTTATTGGTCCAATCCCCGAAAAATGTATCTAGTGGATGGAATCTTCCGATTGCACCAATATCCGATGGAAAAAATTTAAGACAGGTCGCAGATTCAATAGCGACAAGTTTATTACCATCAAGAGCTAAATGGTGTATATTTGGTAATACACCA] [-] EMBL CD141842 [ GTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGAATTGCTAGTGCC ] consensusID : consensus_4866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [AGTCATGATGTGTGTTGTTGTGGGCGTTTCGGTGTGCGTGGATAGGGTAGTCTGTGTGGTAAACCACTGCCATGGAATGCTAAACGCCCTCCCTTTATGCGGGAGTTGTGCTGAGTGTGGTTGTCGATCCGCGCCATGGCGGTCGCGTGAATTCGATTAGGGCGACTCCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAATCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAACCTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTCGCC] [-] EMBL CD141638 [AGTCATGATGTGTGTTGTTGTGGGCGTTTCGGTGTGCGTGGATAGGGTAGTCTGTGTGGTAAACCACTGCCATGGAATGCTAAACGCCCTCCCTTTATGCGGGAGTTGTGCTGAGTGTGGTTGTCGATCCGCGCCATGGCGGTCGCGTGAATTCGATTAGGGCGACTCCGTTCTCTGGTTGTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCAGTTATTGCACCAGAATTGAAATCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTCGAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAACCTAAAAGAATTGCTAGTGCCCTTTCAAAAGGAGTCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4866#0 ------------------------------------------------------------ consensus_4866#1 AGTCATGATGTGTGTTGTTGTGGGCGTTTCGGTGTGCGTGGATAGGGTAGTCTGTGTGGT 60 consensus_4866#0 -------------------------------------------------GGTCA-TATAG 10 consensus_4866#1 AAACCACTGCCATGGAATGCTAAACGCCCTCCCTTTATGCGGGAGTTGTGCTGAGTGTGG 120 * * * * * * consensus_4866#0 CTGAGTATTTACTTCTC--TGGCCAAGAAAAGTAAGTTGGTAATGTCTCGTTCTCTGGTT 68 consensus_4866#1 TTGTCGATCCGCGCCATGGCGGTCGCGTGAATTCGATTAGGGCGACTCCGTTCTCTGGTT 180 ** ** * * ** * * ** * ** * ************ consensus_4866#0 GTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCA 128 consensus_4866#1 GTATTGAAAGATATCAAAAATTGGAATATCTTCAGTGGGTTGTGTATACGTCGACCCGCA 240 ************************************************************ consensus_4866#0 GTTATTGCACCAGAATTGAAACCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTC 188 consensus_4866#1 GTTATTGCACCAGAATTGAAATCACTTGAAAAACAAGTGGCCGATTTACTTGGAAAAGTC 300 ********************* ************************************** consensus_4866#0 GAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAAACTAAAAGA 248 consensus_4866#1 GAATTTGAAAGAAGTCACTTGTCGGCACATGAATTAAGACATGAAACTGAACCTAAAAGA 360 *************************************************** ******** consensus_4866#0 ATTGCTAGTGCCCTTTCAAAAGGAGTTGGTAAAAGTGCAGAAGAATCACTCATAACTGCT 308 consensus_4866#1 ATTGCTAGTGCCCTTTCAAAAGGAGTCGCC------------------------------ 390 ************************** * consensus_4866#0 CGTGAAGCGGAGATAATGTGGGAGTTAGAGGCTGAGCAATATAAGCCAGCAGAACGATTG 368 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 ACAGAAAATGATAAATCTGAAAATTTAAAGTCCGCTTGGCGTGTATTAGATAAACCTTTG 428 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TACTTATTGGTCCAATCCCCGAAAAATGTATCTAGTGGATGGAATCTTCCGATTGCACCA 488 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 ATATCCGATGGAAAAAATTTAAGACAGGTCGCAGATTCAATAGCGACAAGTTTATTACCA 548 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TCAAGAGCTAAATGGTGTATATTTGGTAATACACCA 584 consensus_4866#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||