These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 509 fasta sequence [CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAACAAATCATTNGACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAATATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAATATTTCAGGGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACATCGTATCGGTTTAACTTGGAGTTGGAATTCAATTTTACGTACTTATGAATCTATTATGAAGTTCAATGGTTTTCTTCTAGGTTTAATTG] [+] EMBL CD086042 [CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAACAAATCATTNGACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAATATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAATATTTCAGGGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACATCGTATCGGTTTAACTTGGAGTTGGAATTCAATTTTACGTACTTATGAATCTATTATGAAGTTCAATGGTTTTCTTCTAGGTTTAATTG] [+] EMBL CD086281 [CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAACAAATCATT GACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAATATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAATATTTCAGAGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACATCGTATCGGGTTAACTTGGAGTTGGAATTCAATTTTACATACTTATGAATCTATTATGAAGTTCAATGGTTTTCTTCTAGGTTTAATTG] consensusID : consensus_4881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [TAGTTAATGGTGAGCAACAAGAATCAAATGATTCATTAATGGAGTTATCTCTTTTTGGTCATAATTCATTGATATCTGATAAAGCACAATTCAATCTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAA] [-] EMBL CD195968 [TAGTTAATGGTGAGCAACAAGAATCAAATGATTCATTAATGGAGTTATCTCTTTTTGGTCATAATTCATTGATATCTGATAAAGCACAATTCAATCTAGCCATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCATGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGAAGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4881#0 CAGTACGGAAGTCAAATGAGTCGGCAACAAGTAGATATTTCCGACCTGCCGTGAACTAAA 60 consensus_4881#1 --------TAGTTAA--TGGTGAGCAACAAGAA------TCAAATGATTCATTAATGGAG 44 *** ** ** ******** * ** * * * ** * consensus_4881#0 CAAATCATTNGACTGAAAATGACATGGCGAAATTTAGTTTTTCCCACAATTCAAACTAGC 120 consensus_4881#1 TTATCTCTTT--TTGGTCATAATTCATTGATATCTGATAAAGC--ACAATTCAATCTAGC 100 * ** ** ** * ** ** * * * ********* ***** consensus_4881#0 CATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCA 180 consensus_4881#1 CATTACTCCATACACTTTGAATAAGGAGATATCTTTGCCAGCTGAACAACGTTTGGATCA 160 ************************************************************ consensus_4881#0 TGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGA 240 consensus_4881#1 TGAAATTGGTTTAAAACTGTTTGTGGATACGTTTCATTCCCTGGATAAAAATGATGGTGA 220 ************************************************************ consensus_4881#0 AGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAACAA 300 consensus_4881#1 AGTTAATTTTAAACGCACATTTCTGATAGCTGATGAGGAAAGAATTGAATTGAAAAA--- 277 ********************************************************* consensus_4881#0 TATACCTTGGTCTGTACTTCATTACAACGTAACTGATCTCATTTCTGATCCCAATAAAAA 360 consensus_4881#1 ------------------------------------------------------------ consensus_4881#0 TATTTCAGGGTCAGAAAGATTTTCAGTCACAACGTCCTCATCACAGTGTATCTATCTACA 420 consensus_4881#1 ------------------------------------------------------------ consensus_4881#0 TCGTATCGGTTTAACTTGGAGTTGGAATTCAATTTTACGTACTTATGAATCTATTATGAA 480 consensus_4881#1 ------------------------------------------------------------ consensus_4881#0 GTTCAATGGTTTTCTTCTAGGTTTAATTG 509 consensus_4881#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||