cluster # 4891

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Schistosoma mansoni
cluster # 4891 cluster # 4891 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4891#0 length = 204 sequences # 2

consensus_4891#1 length = 107 sequences # 1

consensusID : consensus_4891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 204
fasta sequence

                              [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAACACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCACTGCAAATTCACTACTGTCAAACA]

[+] EMBL CD124820             [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAACACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCACTGCAAATTCACTACTGTCAAACA]
[+] EMBL CD124593             [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAACACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCACTACAAATTCACTACTGTCAAACA]




>consensus_4891#0
TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACC
ATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAAC
ACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCA
CTGCAAATTCACTACTGTCAAACA

consensusID : consensus_4891#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 107
fasta sequence

                              [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTTCCTTNNNNNNNACCN]

[+] EMBL CD124623             [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTTCCTTNNNNNNNACCN]




>consensus_4891#1
TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACC
ATCACAATACTTTCCCACTCCAAAACACATTTCCTTNNNNNNNACCN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4891#0      TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACC 60
consensus_4891#1      TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACC 60
                      ************************************************************

consensus_4891#0      ATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAAC 120
consensus_4891#1      ATCACAATACTTTCCCACTCCAAAACACATT---TCCTTNNNNNNNACCN---------- 107
                      *******************************   * **        ***           

consensus_4891#0      ACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCA 180
consensus_4891#1      ------------------------------------------------------------
                                                                                  

consensus_4891#0      CTGCAAATTCACTACTGTCAAACA 204
consensus_4891#1      ------------------------