These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 204 fasta sequence [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAACACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCACTGCAAATTCACTACTGTCAAACA] [+] EMBL CD124820 [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAACACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCACTGCAAATTCACTACTGTCAAACA] [+] EMBL CD124593 [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAACACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCACTACAAATTCACTACTGTCAAACA] consensusID : consensus_4891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 107 fasta sequence [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTTCCTTNNNNNNNACCN] [+] EMBL CD124623 [TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACCATCACAATACTTTCCCACTCCAAAACACATTTCCTTNNNNNNNACCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4891#0 TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACC 60 consensus_4891#1 TTCTCGTGGATTGATCAGCTTGCACGAGTGTGGTGGACAACACTTCCTATGTCCGGCACC 60 ************************************************************ consensus_4891#0 ATCACAATACTTTCCCACTCCAAAACACATTCCGTTCTCAGCTGAAACCTCACCGTGAAC 120 consensus_4891#1 ATCACAATACTTTCCCACTCCAAAACACATT---TCCTTNNNNNNNACCN---------- 107 ******************************* * ** *** consensus_4891#0 ACCGTAGATGCTGAGAAGCGCGAACAAACACAAGAGCACACACTGTACCATCACTGCTCA 180 consensus_4891#1 ------------------------------------------------------------ consensus_4891#0 CTGCAAATTCACTACTGTCAAACA 204 consensus_4891#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||