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Schistosoma mansoni
cluster # 4902 cluster # 4902       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4902#0 length = 671 sequences # 2  
consensus_4902#1 length = 537 sequences # 1  

consensusID : consensus_4902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 671
fasta sequence
                              [CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAAATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAAATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAATTGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTGAATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAACACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATTAGCATTTTTCTCCGTCAAAATTATTTCATATCTAATCCTTCACTAATGTCAACATCTCAACACTAGTTTATGATAATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTGTCAATATGACAAAT]

[+] EMBL CD080567             [CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAAATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAAATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAATTGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTGAATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAACACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATTAGCATTTTTCTCCGTCAAAATTATTTCATATCTAATCCTTCACTAATGTCAACATCTCAACACTAGTTTATGATAATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTGTCAATATGACAAAT]
[+] EMBL CD059578             [                                                                                                                                                                                                                                                                                ATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGT                                                                                                                                                                                                    ]


>consensus_4902#0 CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAA ATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAA ATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAAT TGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTG AATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTA GCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTA TTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACA GATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAAC ACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATT AGCATTTTTCTCCGTCAAAATTATTTCATATCTAATCCTTCACTAATGTCAACATCTCAA CACTAGTTTATGATAATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTGTCA ATATGACAAAT



consensusID : consensus_4902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence
                              [ATATACGTAATGAATTTTCTTATTTGATATTTACTTATCATCAATATGTTGTGACTTTTGTGAAAAAAATTATTTTTCTTCATTCCTTTTAAATATCCAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCATAAAAATTATTATATATTAATTTTAATTAGATAATCATTTCAAACCAGAAAGCATTAAACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATCCGAAAATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATTATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGATATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG]

[+] EMBL CD133901             [ATATACGTAATGAATTTTCTTATTTGATATTTACTTATCATCAATATGTTGTGACTTTTGTGAAAAAAATTATTTTTCTTCATTCCTTTTAAATATCCAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCATAAAAATTATTATATATTAATTTTAATTAGATAATCATTTCAAACCAGAAAGCATTAAACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATCCGAAAATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATTATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGATATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG]


>consensus_4902#1 ATATACGTAATGAATTTTCTTATTTGATATTTACTTATCATCAATATGTTGTGACTTTTG TGAAAAAAATTATTTTTCTTCATTCCTTTTAAATATCCAGGCTTTACAGCATCTTCCTAT TTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAA AGAACAGAATGGTACAGATATTGATCTACTTGGTAAGCTAAGTGAAGACTTATTATTACC ATAGGAAGTTCATAAAAATTATTATATATTAATTTTAATTAGATAATCATTTCAAACCAG AAAGCATTAAACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAA TCCGAAAATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTC CTGTATTATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTG ATAGATATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4902#0      CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAA 60
consensus_4902#1      ------------------------------------------------------------
                                                                                  

consensus_4902#0      ATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAA 120
consensus_4902#1      -------------------ATATACGT-AATGAATTTTCTTATTTGATAT-TTACTTATC 39
                                         *****  * ***  **         **** * ** * *   

consensus_4902#0      ATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAAT 180
consensus_4902#1      ATCAAT--ATGTTGTGACTTTTGTGAAAAAAATTATTTTTCT----TCATTCCTTTTAAA 93
                      **   *  ** ** **** ** **   * *  * ** * *        * ***   *** 

consensus_4902#0      TGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTG 240
consensus_4902#1      TATCCAGGCTTTACAGCATCTTCC-TATTTGTAATCAGA----ATTTATTTTATTATTTA 148
                      * ***      *  * **  ***  **  *  *** * *     ****** *  * *** 

consensus_4902#0      AATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTA 300
consensus_4902#1      ATTACATT-------TATGCAACGTTGTTTGACTTTCA--AAGAACAGAATGGT------ 193
                      * **** *       * **  *        ** *****  *  **     *  *      

consensus_4902#0      GCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTA 360
consensus_4902#1      ACAGATATTGA-TCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCA 252
                       ** ** * ** *** **    * ***         ***  ****   *     * ** *

consensus_4902#0      TTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACA 420
consensus_4902#1      TAAAAATTATTA--TATATTAATTTTA-ATTAGATAATCATTTCAAACCAGAAAGCATTA 309
                      *   * *  ***  ** *** **   *  **   * *   *   * * ***** *    *

consensus_4902#0      GATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAAC 480
consensus_4902#1      AACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATC--CGAAA 367
                       * * *  * ***  * *****  **    *    *** **  *** *   **  **** 

consensus_4902#0      ACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATT 540
consensus_4902#1      ATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATT 427
                      *     ** * * ** *    * *      ****** ****       **  * * ****

consensus_4902#0      AGCATTTTTCTCCGTCAAAAT--TATTTCATATCTAATCCTTCACTAATGTCAACATCTC 598
consensus_4902#1      ATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGAT- 486
                      *   *   *  * * **** *   * *   ***    *     * * ****  * *  * 

consensus_4902#0      AACACTAGTTTATGATA-ATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTG 657
consensus_4902#1      ATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG--------- 537
                      *  * ****** *   * * ****  * **  * ***  *  *    **           

consensus_4902#0      TCAATATGACAAAT 671
consensus_4902#1      --------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)