These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 576 fasta sequence [CCACTGAGAAACTGCGTTTAGCACATTTAATGACATATGGTGAAGAGCCTACATGGAAATCACTGCAAAATGATCAAATCAAAGATGGAAGGTTAGAATATTTAGGTCGTCGTATACTGAAATATCCCAAAGTCAATGGTGATGATGATTATGATGATAAGCAAATTGAAACCAATAAGGATAGATTTGAAGAACTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAATGATCTGAACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGGCAATGGATACATTTATA-TAAACATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATCTCTCTTTCTTTCTCCCTCTCACTGTCTCCCTGTCTCTATCCCGAAAACCCACTGTATTAGTGCATATACAGTATATTTCTGCATCCAATCATTTAAT] [+] EMBL CD149661 [CCACTGAGAAACTGCGTTTAGCACATTTAATGACATATGGTGAAGAGCCTACATGGAAATCACTGCAAAATGATCAAATCAAAGATGGAAGGTTAGAATATTTAGGTCGTCGTATACTGAAATATCCCAAAGTCAATGGTGATGATGATTATGATGATAAGCAAATTGAAACCAATAAGGATAGATTTGAAGAACTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAATGATCTGAACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGGCAATGGATACATTTATA TAAACATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATCTCTCTT ] [-] EMBL AI820444 [ ACCAAACAAATGAATCAAAATTATCTGAACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGCCAATGGATACATTTATATTAAACATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATCTCTCTTTCTTTCTCCCTCTCACTGTCTCCCTGTCTCTATCCCGAAAACCCACTGTATTAGTGCATATACAGTATATTTCTGCATCCAATCATTTAAT] consensusID : consensus_4912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TAATTTTTAACTGCCTAAATGGTTTATTTTTCATTGTTGATCTTTTCTTTATCAGTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAGTGATCTGAACAATTGATTTCTTTGGTCAGAAATTAATCAGATTGGCAAATGGATACTTTTATATAAACATATCAGA] [+] EMBL CD141200 [TAATTTTTAACTGCCTAAATGGTTTATTTTTCATTGTTGATCTTTTCTTTATCAGTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAGTGATCTGAACAATTGATTTCTTTGGTCAGAAATTAATCAGATTGGCAAATGGATACTTTTATATAAACATATCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4912#0 CCACTGAGAAACTGCGTTTAGCACATTTAATGACATATGGTGAAGAGCCTACATGGAAAT 60 consensus_4912#1 ------------------------------------------------------------ consensus_4912#0 CACTGCAAAATGATCAAATCAAAGATGGAAGGTTAGAATATTTAGGTCGTCGTATACTGA 120 consensus_4912#1 ------------------------------------------------------------ consensus_4912#0 AATATCCCAAAGTCAATGGTGATGATGATTATGATGATAAGCAAATTGAAACCAATAAGG 180 consensus_4912#1 ----------------TAAT--TTTTAACTGCCTAAATGGTTTATTTTTCATTGTTGATC 42 * * * * * * ** * ** * * * consensus_4912#0 ATAGATTTGAAGAACTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGA 240 consensus_4912#1 TTTTCTTT--ATCAGTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGA 100 * *** * * ********************************************* consensus_4912#0 GAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGA 300 consensus_4912#1 GAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGA 160 ************************************************************ consensus_4912#0 TACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAATGATCTGA 360 consensus_4912#1 TACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAGTGATCTGA 220 *************************************************** ******** consensus_4912#0 ACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGGCAA-TGGATACATTTATATAAAC 419 consensus_4912#1 ACAATTGATTTCTTTGGTCAGAAATTAATCAGATTGGCAAATGGATACTTTTATATAAAC 280 ************************* ************** ******* *********** consensus_4912#0 ATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATC 479 consensus_4912#1 ATATCAGA---------------------------------------------------- 288 ******** consensus_4912#0 TCTCTTTCTTTCTCCCTCTCACTGTCTCCCTGTCTCTATCCCGAAAACCCACTGTATTAG 539 consensus_4912#1 ------------------------------------------------------------ consensus_4912#0 TGCATATACAGTATATTTCTGCATCCAATCATTTAAT 576 consensus_4912#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||