cluster # 4915

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Schistosoma mansoni
cluster # 4915 cluster # 4915 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4915#0 length = 525 sequences # 2

consensus_4915#1 length = 222 sequences # 1

consensusID : consensus_4915#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 525
fasta sequence

                              [AAATTGAATTACGTCTTCGTATGCGTGAAGAAATTGCACCATCTACACGTATTGGTTCAGTTATATCAAGTTTACCCGTTAATTTACGATCACAAATGCATTTTTTAACTGATAGTACATTTTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAACGACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTATTTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGTTTTATTGAAAGTGGAAATTCAAGATCAAAATGACAACAGACCAACATTCAGTGCACAAAGTCAAACAGTCACTTTATCTGAAGCTACTACTGTGGGCACACTAATAAGTATTAATGCAGCAACAGATGCCGATATTGACCCTGAAAATCAGATACAACGTTATACTCTTGTCGAACATACAGGTACATTTAAACTAGATTTATCTGGACTCCCCACTGTTCGTTTAGAATTATTACGTCCAC]

[+] EMBL CD192169             [AAATTGAATTACGTCTTCGTATGCGTGAAGAAATTGCACCATCTACACGTATTGGTTCAGTTATATCAAGTTTACCCGTTAATTTACGATCACAAATGCATTTTTTAACTGATAGTACATTTTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAACGACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTATTTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGTTTTATTGAAAGTGGAAATTCAAGATCAAAATGACAACAGACCAACATTCAGTGCACAAAGTCAAACAGTCACTTTATCTGAAGCTACTACTGTGGGCACACTAATAAGTATTAA                                                                                                                                ]
[-] EMBL CD166776             [                                                                                                                                                                                                                                                                                                                                                       TCAAACAGTCACTTTATCTGAAGCTACTACTGTGGGCACACTAATAAGTATTAATGCAGCAACAGATGCCGATATTGACCCTGAAAATCAGATACAACGTTATACTCTTGTCGAACATACAGGTACATTTAAACTAGATTTATCTGGACTCCCCACTGTTCGTTTAGAATTATTACGTCCAC]




>consensus_4915#0
AAATTGAATTACGTCTTCGTATGCGTGAAGAAATTGCACCATCTACACGTATTGGTTCAG
TTATATCAAGTTTACCCGTTAATTTACGATCACAAATGCATTTTTTAACTGATAGTACAT
TTTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAAC
GACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTA
TTTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGTTTTATTGAAAGTGGAAA
TTCAAGATCAAAATGACAACAGACCAACATTCAGTGCACAAAGTCAAACAGTCACTTTAT
CTGAAGCTACTACTGTGGGCACACTAATAAGTATTAATGCAGCAACAGATGCCGATATTG
ACCCTGAAAATCAGATACAACGTTATACTCTTGTCGAACATACAGGTACATTTAAACTAG
ATTTATCTGGACTCCCCACTGTTCGTTTAGAATTATTACGTCCAC

consensusID : consensus_4915#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [CTTCATACTTGTTATTCGCACTGGTCGATACCGCATGGTCTTTTTAACTGATAGTACATTTTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAACGACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTATTTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGT]

[-] EMBL CD202827             [CTTCATACTTGTTATTCGCACTGGTCGATACCGCATGGTCTTTTTAACTGATAGTACATTTTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAACGACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTATTTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGT]




>consensus_4915#1
CTTCATACTTGTTATTCGCACTGGTCGATACCGCATGGTCTTTTTAACTGATAGTACATT
TTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAACG
ACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTAT
TTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4915#0      AAATTGAATTACGTCTTCGTATGCGTGAAGAAATTGCACCATCTACACGTATTGGTTCAG 60
consensus_4915#1      ----------------------------------------------------------CT 2
                                                                                  

consensus_4915#0      TTATATCAAGTTTACCCGTTAATTTACGATCACAAATGCATTTTTTAACTGATAGTACAT 120
consensus_4915#1      TCATACTTGTTATTCGCACTGGT---CGATACCGCATGGTCTTTTTAACTGATAGTACAT 59
                      * ***     * * * *  *  *   ****  *  ***   *******************

consensus_4915#0      TTTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAAC 180
consensus_4915#1      TTTTTACAGTCACACCAACAACTGGTGAAATACGTGTTGGACGTTTAATTGATAGAGAAC 119
                      ************************************************************

consensus_4915#0      GACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTA 240
consensus_4915#1      GACTATGTCCGGAATTTAAACTTTGTTGTGGTGTGATTACATGTGAATTAAAAGCTAGTA 179
                      ************************************************************

consensus_4915#0      TTTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGTTTTATTGAAAGTGGAAA 300
consensus_4915#1      TTTTTGTAACAAACAAAGCTGCAGGAGAATTCGCTGCTAGTGT----------------- 222
                      *******************************************                 

consensus_4915#0      TTCAAGATCAAAATGACAACAGACCAACATTCAGTGCACAAAGTCAAACAGTCACTTTAT 360
consensus_4915#1      ------------------------------------------------------------
                                                                                  

consensus_4915#0      CTGAAGCTACTACTGTGGGCACACTAATAAGTATTAATGCAGCAACAGATGCCGATATTG 420
consensus_4915#1      ------------------------------------------------------------
                                                                                  

consensus_4915#0      ACCCTGAAAATCAGATACAACGTTATACTCTTGTCGAACATACAGGTACATTTAAACTAG 480
consensus_4915#1      ------------------------------------------------------------
                                                                                  

consensus_4915#0      ATTTATCTGGACTCCCCACTGTTCGTTTAGAATTATTACGTCCAC 525
consensus_4915#1      ---------------------------------------------