cluster # 4921

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Schistosoma mansoni
cluster # 4921 cluster # 4921 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4921#0 length = 411 sequences # 2

consensus_4921#1 length = 406 sequences # 1

consensusID : consensus_4921#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 411
fasta sequence

                              [GCGATAAGCAGTAGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATTTGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAATTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACTGAAGCTTGTTGTTTCGAACATAATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAACTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTGGGGCGGGCCCATATAGTCACCTGGCCAATGAAACTCAACTTTAGGATTTGTTATTGAAGCAGGAACAGTTACTCCTCGTAATTCAATATGATCTTTATTAAGATG]

[+] EMBL CD189129             [GCGATAAGCAGTAGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATTTGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAATTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACTGAAGCTTGTTGTTTCGAACATAATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAACTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTGGGGCGGGCCCATATAGTCACCTGGCCAATGAAACTCAACTTTAGGATTTGTTATTGAAGCAGGAACAGTTACTCCTCGTAATTCAATATGATCTTTATTAAGATG]
[+] EMBL CD188988             [GCGATAAGCAGTAGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATTTGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAATTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACTGAAGCTTGTTGTTTCGAACATAATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAACTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTGGGGCGGGCCCATATAGTCACCTGGCCAATGAAACTCAACTTTAGGATTTGTTATTGAAGCAGGAACAGTTACTCCTCGTAATTCAATATGATCTTTATTAAGATG]




>consensus_4921#0
GCGATAAGCAGTAGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTG
AAAAATTGGATTTGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATAT
GCTCGTTAATAATTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACTGAAGCTTGTT
GTTTCGAACATAATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGA
CTTATAACCAAACTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTC
AATTTGGGGCGGGCCCATATAGTCACCTGGCCAATGAAACTCAACTTTAGGATTTGTTAT
TGAAGCAGGAACAGTTACTCCTCGTAATTCAATATGATCTTTATTAAGATG

consensusID : consensus_4921#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [CTCTTTTCTATTCCAGATTACAGGGGTGGACATGTCCGGATAAGTTATGCGATAAGCAGTAGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATTTGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAATTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACCGAAGCTTGTTGTTTCGAACATAATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAACTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTTAGGGGCTATCAATTTTATTACTACAATTATTTACATAAAAACCCCAGCCCTA]

[+] EMBL BG930392             [CTCTTTTCTATTCCAGATTACAGGGGTGGACATGTCCGGATAAGTTATGCGATAAGCAGTAGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATTTGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAATTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACCGAAGCTTGTTGTTTCGAACATAATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAACTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTTAGGGGCTATCAATTTTATTACTACAATTATTTACATAAAAACCCCAGCCCTA]




>consensus_4921#1
CTCTTTTCTATTCCAGATTACAGGGGTGGACATGTCCGGATAAGTTATGCGATAAGCAGT
AGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATT
TGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAA
TTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACCGAAGCTTGTTGTTTCGAACATA
ATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAA
CTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTTAGGGGC
TATCAATTTTATTACTACAATTATTTACATAAAAACCCCAGCCCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4921#0      ------------------------------------------------GCGATAAGCAGT 12
consensus_4921#1      CTCTTTTCTATTCCAGATTACAGGGGTGGACATGTCCGGATAAGTTATGCGATAAGCAGT 60
                                                                      ************

consensus_4921#0      AGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATT 72
consensus_4921#1      AGTTAAGTTTTTTAAGGCTTGAGAAATAAGATCACCAAAACGAATGTGAAAAATTGGATT 120
                      ************************************************************

consensus_4921#0      TGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAA 132
consensus_4921#1      TGATATGGTACTTTCAGGGGATTCAATAAAAGTTTTCGGCTCACATATGCTCGTTAATAA 180
                      ************************************************************

consensus_4921#0      TTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACTGAAGCTTGTTGTTTCGAACATA 192
consensus_4921#1      TTTGTCTAAATGAACCAAACTCGGATCTGTAATCAACCGAAGCTTGTTGTTTCGAACATA 240
                      ************************************* **********************

consensus_4921#0      ATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAA 252
consensus_4921#1      ATTATCAATAGTCCTTCTGGCTTCTGATTGGCTAATACATTCGCCTGACTTATAACCAAA 300
                      ************************************************************

consensus_4921#0      CTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTGGGGCGG 312
consensus_4921#1      CTGTGAAAATAAAGCTGTAACAGGTCCCTTAATTATTCGAATATCTTCAATTTTAGGGGC 360
                      *****************************************************  ** * 

consensus_4921#0      -GCCCATATAGTCACC-TGGCCAATGAAACTCAACTTTAGGATTTGTTATTGAAGCAGGA 370
consensus_4921#1      TATCAATTTTATTACTACAATTATTTACATAAAAACCCCAGCCCTA-------------- 406
                         * ** *  * **       * * * *   **      *   *               

consensus_4921#0      ACAGTTACTCCTCGTAATTCAATATGATCTTTATTAAGATG 411
consensus_4921#1      -----------------------------------------