cluster # 4923

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Schistosoma mansoni
cluster # 4923 cluster # 4923 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4923#0 length = 608 sequences # 2

consensus_4923#1 length = 295 sequences # 1

consensusID : consensus_4923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence

                              [TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTAAAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAGCTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAGACGGAACT]

[-] EMBL CD199879             [TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCA                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD078444             [                      TGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTAAAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAGCTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAGACGGAACT]




>consensus_4923#0
TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTAC
AGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGG
TGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTA
TAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTA
AAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAG
CTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACG
GGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCG
TGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTAC
CAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTC
TTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAG
ACGGAACT

consensusID : consensus_4923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [TTTTATTATGTTTTTAATGGAGTTTGTTCTCTGAGCTGAATGGTCCGTCGCAAGTTGCACTTCTACGACCATTCACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG]

[+] EMBL CD166850             [TTTTATTATGTTTTTAATGGAGTTTGTTCTCTGAGCTGAATGGTCCGTCGCAAGTTGCACTTCTACGACCATTCACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG]




>consensus_4923#1
TTTTATTATGTTTTTAATGGAGTTTGTTCTCTGAGCTGAATGGTCCGTCGCAAGTTGCAC
TTCTACGACCATTCACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGG
ATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTC
CGAGGAGCATGAATTACCATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTC
GGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4923#0      TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTAC 60
consensus_4923#1      ------------------------------------------------------------
                                                                                  

consensus_4923#0      AGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGG 120
consensus_4923#1      ------------------------------------------------------------
                                                                                  

consensus_4923#0      TGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTA 180
consensus_4923#1      ------------------------------------------------------------
                                                                                  

consensus_4923#0      TAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTA 240
consensus_4923#1      ------------------------------------------------------------
                                                                                  

consensus_4923#0      AAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAG 300
consensus_4923#1      -------------------------------------TTTTAT-TATGTTTTTAATGGAG 22
                                                            *  **  ** ***   * * **

consensus_4923#0      CTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACG 360
consensus_4923#1      TTTGTTCTCT----GAGCTGAATGGTCCGTCGCA-AGTTGCACTTCTACGACCATTCACG 77
                       * **  ***     *  * *   *** *  *** *     * ***    ****  ****

consensus_4923#0      GGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCG 420
consensus_4923#1      GGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCG 137
                      ************************************************************

consensus_4923#0      TGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTAC 480
consensus_4923#1      TGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTAC 197
                      ************************************************************

consensus_4923#0      CAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTC 540
consensus_4923#1      CATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTC 257
                      ** ******************** ************************************

consensus_4923#0      TTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAG 600
consensus_4923#1      TTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG---------------------- 295
                      **************************************                      

consensus_4923#0      ACGGAACT 608
consensus_4923#1      --------