cluster # 4956

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Schistosoma mansoni
cluster # 4956 cluster # 4956 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4956#0 length = 383 sequences # 2

consensus_4956#1 length = 86 sequences # 1

consensusID : consensus_4956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 383
fasta sequence

                              [CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCACGTTTTCCTTATCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACATAATGAATGTTAGTTTAAGACCCGGCCATTCACTTCTCGACCCGAATTTCGAGTCTTACAAACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAAACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCTGTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGTGTTGATAAATGTACCACAGTATC]

[+] EMBL CD122873             [CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCACGTTTTCCTTATCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACATAATGAATGTTAGTTTAAGACCCGGCCATTCACTTCTCGACCCGAATTTCGAGTCTTACAAACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAAACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCTGTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGTGTTGATAAATGTACCACAGTATC]
[+] EMBL CD122979             [CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCACGTTTTCCTTAGCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACATAATGAATGTTAGTTTAAGACCCGACCATTCACTTCTCGACCCGAATTTCGAGTCTTACAAACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAAACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCTGTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGTGTTGATAAATGTACCACAGTATC]




>consensus_4956#0
CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCAC
GTTTTCCTTATCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACAT
AATGAATGTTAGTTTAAGACCCGGCCATTCACTTCTCGACCCGAATTTCGAGTCTTACAA
ACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAA
ACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCT
GTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGT
GTTGATAAATGTACCACAGTATC

consensusID : consensus_4956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 86
fasta sequence

                              [TGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTTCCACAATATATCTTACATCACTACCACTGTA]

[+] EMBL CD059853             [TGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTTCCACAATATATCTTACATCACTACCACTGTA]




>consensus_4956#1
TGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTTCCACA
ATATATCTTACATCACTACCACTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4956#0      CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCAC 60
consensus_4956#1      -TGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTTCCAC 59
                       ****************************************************** ****

consensus_4956#0      GTTTTCCTTATCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACAT 120
consensus_4956#1      AATATATCTTACATCACTACCA----CTGTA----------------------------- 86
                        * *   *  ** * *** **    * * *                             

consensus_4956#0      AATGAATGTTAGTTTAAGACCCGGCCATTCACTTCTCGACCCGAATTTCGAGTCTTACAA 180
consensus_4956#1      ------------------------------------------------------------
                                                                                  

consensus_4956#0      ACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAA 240
consensus_4956#1      ------------------------------------------------------------
                                                                                  

consensus_4956#0      ACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCT 300
consensus_4956#1      ------------------------------------------------------------
                                                                                  

consensus_4956#0      GTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGT 360
consensus_4956#1      ------------------------------------------------------------
                                                                                  

consensus_4956#0      GTTGATAAATGTACCACAGTATC 383
consensus_4956#1      -----------------------