These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 383 fasta sequence [CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCACGTTTTCCTTATCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACATAATGAATGTTAGTTTAAGACCCGGCCATTCACTTCTCGACCCGAATTTCGAGTCTTACAAACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAAACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCTGTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGTGTTGATAAATGTACCACAGTATC] [+] EMBL CD122873 [CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCACGTTTTCCTTATCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACATAATGAATGTTAGTTTAAGACCCGGCCATTCACTTCTCGACCCGAATTTCGAGTCTTACAAACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAAACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCTGTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGTGTTGATAAATGTACCACAGTATC] [+] EMBL CD122979 [CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCACGTTTTCCTTAGCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACATAATGAATGTTAGTTTAAGACCCGACCATTCACTTCTCGACCCGAATTTCGAGTCTTACAAACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAAACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCTGTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGTGTTGATAAATGTACCACAGTATC] consensusID : consensus_4956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 86 fasta sequence [TGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTTCCACAATATATCTTACATCACTACCACTGTA] [+] EMBL CD059853 [TGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTTCCACAATATATCTTACATCACTACCACTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4956#0 CTGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTACCAC 60 consensus_4956#1 -TGTTTGGCATATGTTTCAAACTATTGTGTCAGCTGGAGCAACAACCTTGTTGTTTCCAC 59 ****************************************************** **** consensus_4956#0 GTTTTCCTTATCAACTCTATCAGAAACCGAACGAGAAGTAGACGAGTCACCGCTCTACAT 120 consensus_4956#1 AATATATCTTACATCACTACCA----CTGTA----------------------------- 86 * * * ** * *** ** * * * consensus_4956#0 AATGAATGTTAGTTTAAGACCCGGCCATTCACTTCTCGACCCGAATTTCGAGTCTTACAA 180 consensus_4956#1 ------------------------------------------------------------ consensus_4956#0 ACTCAGTCTGCTTAAAATACCCATTTATGAGGCAAGTAGTCAAAATGGAATTTGCTGCAA 240 consensus_4956#1 ------------------------------------------------------------ consensus_4956#0 ACCTCTAAACGAAGTTTCTTCTAAACAACATCTCAAAGCATACAATAATATTAACTGTCT 300 consensus_4956#1 ------------------------------------------------------------ consensus_4956#0 GTGTGTTAATCCATTTGATACCAGTCATGTTTACTACATGAAGACTGATGGGTCTTTAGT 360 consensus_4956#1 ------------------------------------------------------------ consensus_4956#0 GTTGATAAATGTACCACAGTATC 383 consensus_4956#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||