These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 434 fasta sequence [TTTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAGAACATTATGGTAAAATTTGAGTGTCGACATACAGTGATCTTTAGAAAATAGCAAACGATCACGTTGGGACGTCTGGTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTTCGGCAAGACTATAATTTATGGACGAACCAATCACGTATAAAATAGCAGGTCTCGGTTCTTGTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAGTTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATTCTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATTAAGGTGGACACTCTCAA] [+] EMBL CD119156 [TTTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAGAACATTATGGTAAAATTTGAGTGTCGACATACAGTGATCTTTAGAAAATAGCAAACGATCACGTTGGGACGTCTGGTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTTCGGCAAGACTATAATTTATGGACGAACCAATCACGTATAAAATAGCAGGTCTCGGTTCTTGTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAGTTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATTCTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATTAAGGTGGACACTCTCA ] [-] EMBL CD118978 [ TTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAAGACATTATGGTAAAATTTGAATGTCGACATACAGTGATCTTTAGCAAATAGCAAACGATCACGTTGGGACGTCTGGTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTTCGGCAAGACTATAATTTATGGACGAACCTATCACGTATAAAATAGCAGGTCTCGGTTCTTGTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAGTTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATTCTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATT AGGTGGACACTCTCAA] consensusID : consensus_4960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [ACGTAATTTATTTTAGCGGACCAATAAAGCCTTCTGACTAGTACAAAGGTGCCCAATTTGATGAAAATTTTATCCGTTTTGGAGGAACTAACAAGACCATCTGGACCTAATGACCGCCATACCGGTTTAAAGACAGAGCTTTAAAAAGGGAAAAGGTGTGTCATTCCGGAAACTGTTGAGTGACATATGAAATTGGGGGTCTAGATGCGAAGTAAGTTTCAAACCTTACTAGCAAACCGATCACGTTGGGACGTCTGGTCCCTATATTGAAGCACAAATACAGCCGGGTGCAAACATTTCGCCATAAAAATAAATTTTCGGGGGGGGGCCGGCCCCCAATCCGCCC] [+] EMBL AI974221 [ACGTAATTTATTTTAGCGGACCAATAAAGCCTTCTGACTAGTACAAAGGTGCCCAATTTGATGAAAATTTTATCCGTTTTGGAGGAACTAACAAGACCATCTGGACCTAATGACCGCCATACCGGTTTAAAGACAGAGCTTTAAAAAGGGAAAAGGTGTGTCATTCCGGAAACTGTTGAGTGACATATGAAATTGGGGGTCTAGATGCGAAGTAAGTTTCAAACCTTACTAGCAAACCGATCACGTTGGGACGTCTGGTCCCTATATTGAAGCACAAATACAGCCGGGTGCAAACATTTCGCCATAAAAATAAATTTTCGGGGGGGGGCCGGCCCCCAATCCGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4960#0 TTTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAGAACATTATGG-TAAAA 59 consensus_4960#1 -------------ACGTAATTTATTTT--AGCGGACCAATA--AAGCCTTCTGACTAGTA 43 * ** ****** * * * * * * * ** ** ** * consensus_4960#0 TTTGAGTGTCGACATACAGTGATCTTTAGAAAATAGCAAACGATCACGTTGGGACGTCTG 119 consensus_4960#1 CAAAGGTGCCCAATTTGATGAAAATTTTATCCGTTTTGGAGGAACTAACAAGACCATCTG 103 *** * * * * * *** * * ** * * * **** consensus_4960#0 GTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTT 179 consensus_4960#1 GACCTAATG------ACCGCCATACCGGTTTAAAGACAGAGCTTTAAAAAGGGAAAAGGT 157 * ** ** ** * * * * * * *** * * *** *** * consensus_4960#0 CGGCAAGACTATAATTTATGGACGAACCAATCACGTATAAAATAGCAGGTCTCGGTTCTT 239 consensus_4960#1 GTGTCATTCCGGAAACTGTTGA-------GTGACATATGAAATTGGGGGTCTAGAT---- 206 * * * ** * * ** * ** *** **** * ***** * * consensus_4960#0 GTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAG 299 consensus_4960#1 ---GCGAAGTAAGTT--TCAAACCTTACTAGCAAACC--GATCACGTTGG--GACGTCTG 257 ***** ** ** ** ** * ** * * * ** * *** ** * consensus_4960#0 TTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATT 359 consensus_4960#1 GTCCCTATA-----TTGAAGCACAAATAC-AGCCGGGTGCA--AACATTTCGCCATAAAA 309 ** *** ** ** ** * * * * ** ****** ** ** consensus_4960#0 CTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATTAA 419 consensus_4960#1 ATAAATTTTCG----GGGGGGGGCCGGCCCCCAATCCGCCC------------------- 346 *** ** ** ** ** ** * * * consensus_4960#0 GGTGGACACTCTCAA 434 consensus_4960#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||