cluster # 4960

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Schistosoma mansoni
cluster # 4960 cluster # 4960 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4960#0 length = 434 sequences # 2

consensus_4960#1 length = 346 sequences # 1

consensusID : consensus_4960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 434
fasta sequence

                              [TTTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAGAACATTATGGTAAAATTTGAGTGTCGACATACAGTGATCTTTAGAAAATAGCAAACGATCACGTTGGGACGTCTGGTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTTCGGCAAGACTATAATTTATGGACGAACCAATCACGTATAAAATAGCAGGTCTCGGTTCTTGTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAGTTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATTCTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATTAAGGTGGACACTCTCAA]

[+] EMBL CD119156             [TTTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAGAACATTATGGTAAAATTTGAGTGTCGACATACAGTGATCTTTAGAAAATAGCAAACGATCACGTTGGGACGTCTGGTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTTCGGCAAGACTATAATTTATGGACGAACCAATCACGTATAAAATAGCAGGTCTCGGTTCTTGTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAGTTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATTCTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATTAAGGTGGACACTCTCA ]
[-] EMBL CD118978             [ TTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAAGACATTATGGTAAAATTTGAATGTCGACATACAGTGATCTTTAGCAAATAGCAAACGATCACGTTGGGACGTCTGGTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTTCGGCAAGACTATAATTTATGGACGAACCTATCACGTATAAAATAGCAGGTCTCGGTTCTTGTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAGTTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATTCTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATT AGGTGGACACTCTCAA]




>consensus_4960#0
TTTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAGAACATTATGGTAAAAT
TTGAGTGTCGACATACAGTGATCTTTAGAAAATAGCAAACGATCACGTTGGGACGTCTGG
TCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTTC
GGCAAGACTATAATTTATGGACGAACCAATCACGTATAAAATAGCAGGTCTCGGTTCTTG
TGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAGT
TCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATTC
TAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATTAAG
GTGGACACTCTCAA

consensusID : consensus_4960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [ACGTAATTTATTTTAGCGGACCAATAAAGCCTTCTGACTAGTACAAAGGTGCCCAATTTGATGAAAATTTTATCCGTTTTGGAGGAACTAACAAGACCATCTGGACCTAATGACCGCCATACCGGTTTAAAGACAGAGCTTTAAAAAGGGAAAAGGTGTGTCATTCCGGAAACTGTTGAGTGACATATGAAATTGGGGGTCTAGATGCGAAGTAAGTTTCAAACCTTACTAGCAAACCGATCACGTTGGGACGTCTGGTCCCTATATTGAAGCACAAATACAGCCGGGTGCAAACATTTCGCCATAAAAATAAATTTTCGGGGGGGGGCCGGCCCCCAATCCGCCC]

[+] EMBL AI974221             [ACGTAATTTATTTTAGCGGACCAATAAAGCCTTCTGACTAGTACAAAGGTGCCCAATTTGATGAAAATTTTATCCGTTTTGGAGGAACTAACAAGACCATCTGGACCTAATGACCGCCATACCGGTTTAAAGACAGAGCTTTAAAAAGGGAAAAGGTGTGTCATTCCGGAAACTGTTGAGTGACATATGAAATTGGGGGTCTAGATGCGAAGTAAGTTTCAAACCTTACTAGCAAACCGATCACGTTGGGACGTCTGGTCCCTATATTGAAGCACAAATACAGCCGGGTGCAAACATTTCGCCATAAAAATAAATTTTCGGGGGGGGGCCGGCCCCCAATCCGCCC]




>consensus_4960#1
ACGTAATTTATTTTAGCGGACCAATAAAGCCTTCTGACTAGTACAAAGGTGCCCAATTTG
ATGAAAATTTTATCCGTTTTGGAGGAACTAACAAGACCATCTGGACCTAATGACCGCCAT
ACCGGTTTAAAGACAGAGCTTTAAAAAGGGAAAAGGTGTGTCATTCCGGAAACTGTTGAG
TGACATATGAAATTGGGGGTCTAGATGCGAAGTAAGTTTCAAACCTTACTAGCAAACCGA
TCACGTTGGGACGTCTGGTCCCTATATTGAAGCACAAATACAGCCGGGTGCAAACATTTC
GCCATAAAAATAAATTTTCGGGGGGGGGCCGGCCCCCAATCCGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4960#0      TTTGGTTTTCCTTTCTTAGCATATTTTCGGGTGAATGTACACAGAACATTATGG-TAAAA 59
consensus_4960#1      -------------ACGTAATTTATTTT--AGCGGACCAATA--AAGCCTTCTGACTAGTA 43
                                    * **   ******   * * *   * *   * * ** **  **  *

consensus_4960#0      TTTGAGTGTCGACATACAGTGATCTTTAGAAAATAGCAAACGATCACGTTGGGACGTCTG 119
consensus_4960#1      CAAAGGTGCCCAATTTGATGAAAATTTTATCCGTTTTGGAGGAACTAACAAGACCATCTG 103
                           *** * *  *  *   *  ***      *     * ** *      *  * ****

consensus_4960#0      GTCCATATATGAAGCACAAATACAGCCGGCTGCAAACATTTCGACATAAAAATAAATTTT 179
consensus_4960#1      GACCTAATG------ACCGCCATACCGGTTTAAAGACAGAGCTTTAAAAAGGGAAAAGGT 157
                      * **  **       **    * * * *  *  * ***   *   * ***   ***   *

consensus_4960#0      CGGCAAGACTATAATTTATGGACGAACCAATCACGTATAAAATAGCAGGTCTCGGTTCTT 239
consensus_4960#1      GTGTCATTCCGGAAACTGTTGA-------GTGACATATGAAATTGGGGGTCTAGAT---- 206
                        *  *  *   **  * * **        * ** *** **** *  ***** * *    

consensus_4960#0      GTGGCGAAATACATTCATCCAATTGGCTGAACATATCTTAGAGATTTTAGCTGACATCAG 299
consensus_4960#1      ---GCGAAGTAAGTT--TCAAACCTTACTAGCAAACC--GATCACGTTGG--GACGTCTG 257
                         ***** **  **  ** **       * ** * *      *  ** *  *** ** *

consensus_4960#0      TTCGTTATGAGAATCCTAAATCTAATTATTAACATGATTCACTAACATTAGATCACAATT 359
consensus_4960#1      GTCCCTATA-----TTGAAGCACAAATAC-AGCCGGGTGCA--AACATTTCGCCATAAAA 309
                       **  ***         **    ** **  * *  * * **  ******    ** **  

consensus_4960#0      CTAATCCCTCACATTGGTTGGAACCAATGATCATAACCCTCATGTGGTAGTATTTATTAA 419
consensus_4960#1      ATAAATTTTCG----GGGGGGGGCCGGCCCCCAATCCGCCC------------------- 346
                       ***    **     **  **  **      **   * * *                   

consensus_4960#0      GGTGGACACTCTCAA 434
consensus_4960#1      ---------------