cluster # 4979

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Schistosoma mansoni
cluster # 4979 cluster # 4979 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4979#0 length = 409 sequences # 2

consensus_4979#1 length = 94 sequences # 1

consensusID : consensus_4979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 409
fasta sequence

                              [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGTAAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT]

[+] EMBL CD160313             [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGTAAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT]
[+] EMBL CD160324             [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAAACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTTGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAG                                                                   ]




>consensus_4979#0
AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGA
ATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT
TTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTAT
TCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAA
TTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCAC
AGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGT
AAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT

consensusID : consensus_4979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 94
fasta sequence

                              [GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTGTCAAGAAATTCTGTGGTAAAACGGACACG]

[+] EMBL AW626395             [GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTGTCAAGAAATTCTGTGGTAAAACGGACACG]




>consensus_4979#1
GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATA
TTTTGTCAAGAAATTCTGTGGTAAAACGGACACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4979#0      AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGA 60
consensus_4979#1      ----------------------------------------------------------GA 2
                                                                                **

consensus_4979#0      ATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT 120
consensus_4979#1      ATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT 62
                      ********** ************ ************************************

consensus_4979#0      TTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTAT 180
consensus_4979#1      TTGTCAAGAAATTCTGT-----GGTAAAACGGACACG----------------------- 94
                      **   **** *******     ****  *   * **                        

consensus_4979#0      TCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAA 240
consensus_4979#1      ------------------------------------------------------------
                                                                                  

consensus_4979#0      TTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCAC 300
consensus_4979#1      ------------------------------------------------------------
                                                                                  

consensus_4979#0      AGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGT 360
consensus_4979#1      ------------------------------------------------------------
                                                                                  

consensus_4979#0      AAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT 409
consensus_4979#1      -------------------------------------------------