These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [GCGGCCGAGGAGAATTCGATTCTGCTGATTCGAAGCTGAGTGGAGTAAGGCAGTGTGTGTGTGTGTATGTATGTATGTATAAAACAACAGCGAAAAACAGAGAAGCAAGAGAACGTCTTAAAAAAGAGTCAATGAAAACAACTTATGTTTCCACTAAACGGAAAAAGTTTGGTCCACGGGATATATAAATATCTGAGTAGGCAACTTCTTGTGCTAATTCCACAGCTCCTTGTTTACGTAATAGTAGAATTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAGGAGCTTCAGATCCAGGAAAACCACTGCCAGATAATAAACCATCACATGTTCTACCATCATTTTTAAATACATTTTCTAATTCATTATC] [+] EMBL CD181661 [GCGGCCGAGGAGAATTCGATTCTGCTGATTCGAAGCTGAGTGGAGTAAGGCAGTGTGTGTGTGTGTATGTATGTATGTATAAAACAACAGCGAAAAACAGAGAAGCAAGAGAACGTCTTAAAAAAGAGTCAATGAAAACAACTTATGTTTCCACTAAACGGAAAAAGTTTGGTCCACGGGATATATAAATATCTGAGTAGGCAACTTCTTGTGCTAATTCCACAGCTCCTTGTTTACGTAATAGTAGAATTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAGGAGCTTCAGATCCAGGAAAACCACTGCCAGATAATAAACCATCACATGTTCTACCATCATTTTTAAATACATTTTCTAATTCATTATC] consensusID : consensus_4983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 255 fasta sequence [CACAGCTCCTTGTTTACGTAATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAAGCCGTGTCGCAGTAATCGAATTNCCCGCGGCCGCCCCATGGCG] [-] EMBL CD130677 [CACAGCTCCTTGTTTACGTAATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAAGCCGTGTCGCAGTAATCGAATTNCCCGCGGCCGCCCCATGGCG] [-] EMBL CD130645 [CACAGCTCCTTGTTTACGTAATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4983#0 GCGGCCGAGGAGAATTCGATTCTGCTGATTCGAAGCTGAGTGGAGTAAGGCAGTGTGTGT 60 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 GTGTGTATGTATGTATGTATAAAACAACAGCGAAAAACAGAGAAGCAAGAGAACGTCTTA 120 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 AAAAAGAGTCAATGAAAACAACTTATGTTTCCACTAAACGGAAAAAGTTTGGTCCACGGG 180 consensus_4983#1 ------------------------------------------------------------ consensus_4983#0 ATATATAAATATCTGAGTAGGCAACTTCTTGTGCTAATTCCACAGCTCCTTGTTTACGTA 240 consensus_4983#1 ----------------------------------------CACAGCTCCTTGTTTACGTA 20 ******************** consensus_4983#0 ATAGTAGAATTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAAC 300 consensus_4983#1 ATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAAC 80 ********* ************************************************** consensus_4983#0 CTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTA 360 consensus_4983#1 CTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTA 140 ************************************************************ consensus_4983#0 ATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCAT 420 consensus_4983#1 ATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCAT 200 ************************************************************ consensus_4983#0 CAACTGAAAGAGGAGCTTCAGATCCAGGAAAACCACTGCCAGATAATAAACCATCACATG 480 consensus_4983#1 CAACTGAAAGAAG---CCGTGTCGCAGTAATCGAATTNCCCGCGGCCGCCCCATGGCG-- 255 *********** * * *** ** * * ** * **** * consensus_4983#0 TTCTACCATCATTTTTAAATACATTTTCTAATTCATTATC 520 consensus_4983#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||