These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCAAACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT] [+] EMBL CD116783 [GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCAAACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT] consensusID : consensus_4995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence [TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTACATCTGAACTATGTAAATCAACACAAACGTCAG] [+] EMBL CD154783 [TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTA ] [-] EMBL CD185177 [ AGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGTTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTACATCTGAACTATGTAAATCAACACAAACGTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4995#0 -------------------------------------------------------GCATT 5 consensus_4995#1 TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATT 60 ***** consensus_4995#0 TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC 65 consensus_4995#1 TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC 120 ************************************************************ consensus_4995#0 GTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG 125 consensus_4995#1 GTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG 180 ******** *************************************************** consensus_4995#0 GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC 185 consensus_4995#1 GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC 240 ************************************************************ consensus_4995#0 CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC 245 consensus_4995#1 CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC 300 ************************************************************ consensus_4995#0 TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT 305 consensus_4995#1 TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT 360 ************************************************************ consensus_4995#0 GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG 365 consensus_4995#1 GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG 420 ************************************************************ consensus_4995#0 TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCT 425 consensus_4995#1 TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCT 480 *********************************************** ************ consensus_4995#0 ACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTC 485 consensus_4995#1 ACAGTTGCGAAGGAAGTTA--ACTGATCGTCGCTCGT--TCACTGGGGACCACTCTATCC 536 ************* * ** * * ** *** ** * ** * * *** * * consensus_4995#0 ATTTTATAGCTGATATATATTATGGGCTAT-TAAATCC-CATAAAAACCAATTTTCAAAC 543 consensus_4995#1 A------AGCTGTTACATC---TGAACTATGTAAATCAACACAAACGTCAG--------- 578 * ***** ** ** ** **** ****** ** *** ** consensus_4995#0 AGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT 580 consensus_4995#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||