Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4995 cluster # 4995       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4995#0 length = 580 sequences # 1  
consensus_4995#1 length = 578 sequences # 2  

consensusID : consensus_4995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCAAACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT]

[+] EMBL CD116783             [GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCAAACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT]


>consensus_4995#0 GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTA ACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTA ACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTC AGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCT TCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAA TTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGA ACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGT GTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTC AGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCA AACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT



consensusID : consensus_4995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 578
fasta sequence
                              [TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTACATCTGAACTATGTAAATCAACACAAACGTCAG]

[+] EMBL CD154783             [TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTA                                 ]
[-] EMBL CD185177             [                                                    AGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGTTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTACATCTGAACTATGTAAATCAACACAAACGTCAG]


>consensus_4995#1 TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATT TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC GTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCT ACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGC TGTTACATCTGAACTATGTAAATCAACACAAACGTCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4995#0      -------------------------------------------------------GCATT 5
consensus_4995#1      TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATT 60
                                                                             *****

consensus_4995#0      TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC 65
consensus_4995#1      TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC 120
                      ************************************************************

consensus_4995#0      GTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG 125
consensus_4995#1      GTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG 180
                      ******** ***************************************************

consensus_4995#0      GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC 185
consensus_4995#1      GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC 240
                      ************************************************************

consensus_4995#0      CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC 245
consensus_4995#1      CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC 300
                      ************************************************************

consensus_4995#0      TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT 305
consensus_4995#1      TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT 360
                      ************************************************************

consensus_4995#0      GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG 365
consensus_4995#1      GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG 420
                      ************************************************************

consensus_4995#0      TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCT 425
consensus_4995#1      TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCT 480
                      *********************************************** ************

consensus_4995#0      ACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTC 485
consensus_4995#1      ACAGTTGCGAAGGAAGTTA--ACTGATCGTCGCTCGT--TCACTGGGGACCACTCTATCC 536
                      ************* * **   * * ** *** **  *  ** *     *   ***  * *

consensus_4995#0      ATTTTATAGCTGATATATATTATGGGCTAT-TAAATCC-CATAAAAACCAATTTTCAAAC 543
consensus_4995#1      A------AGCTGTTACATC---TGAACTATGTAAATCAACACAAACGTCAG--------- 578
                      *      ***** ** **    **  **** ******  ** ***   **          

consensus_4995#0      AGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT 580
consensus_4995#1      -------------------------------------
                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)