cluster # 5000

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Schistosoma mansoni
cluster # 5000 cluster # 5000 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5000#0 length = 428 sequences # 3

consensusID : consensus_5000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 428
fasta sequence

                              [TTCATCCTGTCACT-GATAGTCTACCTACTTCTACAATGATTTCATTGCCTGGAATGCCACCATTAGACGTTAAAATGCCTCCTCTAGAAAGTCTCAATCTTTCTACAAACCAAAGTTCATAAGTAATACATTTGTTTTGTTGAATGAGAAAAGAAATGACTTTTTATCAATTCCGTATATCGCAT-ATTTACACCTCCTTAGTCAATTGTTTTTCCAATATATACATACAATGTGATAAACAATCTGTGTGTTTTATTAATGTGTAATTACATGCTCTTCTTTTTTTTTTAAATTTGTAAGTTTTGGGCATGTTTAATTTATTGTGAATTAATCCACATCGTAAATATCATATTGTTTCGGGATATTCTAAGCTATCAGTATCATTTTGAAGTGCCTCTTACAGAAAAAATTAGTGTACTCTAATTTTC]

[+] EMBL CD196781             [TTCATCCTGTCACT GATAGTCTACCTACTTCTACAATGATTTCATTGCCTGGAATGCCACCATTAGACGTTAAAATGCCTCCTCTAGAAAGTCTCAATCTTTCTACAAACCAAAGTTCATAAGTAATACATTTGTTTTGTTGAATGAGAAAAGAAATGACTTTTTATCAATTCCGTATATCGCAT ATTTACACCTCCTTAGTCAATTGTTTTTCCAATATATACATACAATGTGATAAACAATCTGTGTGTTTTATTAATGTGTAATTACATGCTCTTCTTTTTTTTTTAAATTTGTAAGTTTTGGGCATGTTTAATTTATTGTGAATTAATCCACATCGTAAATATCATATTGTTTCGGGATATTCTAAGCTATCAGTATCATTTTGAAGTGCCTCTTACAGAAAAAATTAGTGTACTCTAATTTTC]
[+] EMBL CD140434             [TTCATCCTGTCACT GATAGTCTACCTACTTCTACAATGATTTCATTGTCTGGAACGCCACCATTAGACGTTAAAATGCCTCCTCTAGAAAGTCTCAATCTTTCTACAAACCAAAGTTCATAAGTAATACATTTGTTTTGTTGAATGAGAAAAGAAATGACTTTTTATCAATTCCGTATATCGCAT ATTTACACCTCCTTAGTCAATTGTTTTTCCAATATATACATACAATGTGATAAACAATCTGTGTGTTTTATTAATATGTAATTACATGCTCTTC TTTTTTTTTAAATTTGTAAGTTTTTGGCATGTTTAATTTATTGTGAATTAATCCACATCGTACATATCATATTGTTTTGGGATATTCTAAGCTATCAGTAT                                               ]
[+] EMBL CD140478             [TTCATCCTGTCACTAGATAGTCTACCTACTTCTACAATGATTTCATTGCCTGGAATGCCACCATTAGACGTTAAAATGCCTCCTCTAGAAAGTCTCAATCTTTCTACAAACCAAAGTTCGTAAGTAATACATTTGTTTTGTTGAATGAGAAAAGAAATGACTTTTTATCAATTCCGTATATCGCATAATTTACACCTCCTTAGT                                                                                                                                                                                                                                  ]




>consensus_5000#0
TTCATCCTGTCACTGATAGTCTACCTACTTCTACAATGATTTCATTGCCTGGAATGCCAC
CATTAGACGTTAAAATGCCTCCTCTAGAAAGTCTCAATCTTTCTACAAACCAAAGTTCAT
AAGTAATACATTTGTTTTGTTGAATGAGAAAAGAAATGACTTTTTATCAATTCCGTATAT
CGCATATTTACACCTCCTTAGTCAATTGTTTTTCCAATATATACATACAATGTGATAAAC
AATCTGTGTGTTTTATTAATGTGTAATTACATGCTCTTCTTTTTTTTTTAAATTTGTAAG
TTTTGGGCATGTTTAATTTATTGTGAATTAATCCACATCGTAAATATCATATTGTTTCGG
GATATTCTAAGCTATCAGTATCATTTTGAAGTGCCTCTTACAGAAAAAATTAGTGTACTC
TAATTTTC

clustalw multiple alignements is not computed in this case