cluster # 5005

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Schistosoma mansoni
cluster # 5005 cluster # 5005 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5005#0 length = 939 sequences # 2

consensus_5005#1 length = 470 sequences # 1

consensusID : consensus_5005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 939
fasta sequence

                              [CGGCACGCGGNNAGCAATTGGTTATAAAATAAAACTGTGTGCAACTGTTTTAGTCATTTGGTTAACTGGTATGAATTTCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAATGTGGGATTTCTTAAAATATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTTAGTTGTTGCTTATGGTCCGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATACTACTACTACTAGTATTAGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCATCTCTTCATGAAGTGTAGTAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATGTACTTGTTTGATTCATATTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTCTTTTTTTTTGGTGTCATCCTGGTCAACAACATGAATAGAATTATTTTTCAAATATTGGAACTATTCTATGTATTCTTTTTGTTTCAAATTTCTATAATCTTTTATCCATTCATTGTTTATCTTTGTTTACCCCCCTTTGTTTGTGTCGATTACTTTTTTTTTCTTTTCTTTTTTTTGTTTACATTGCACAATCTTCTCCCCCCTCCGTGTATGTACAGTCTAGGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTANGTGTATGTACATGTGACCAATGAATTACTTTCATCATGTTTCATTTCATTCTCTTTTTTGGTTATTTATTTATATTTTTATTTGGATAGAAATCTTTC-ATATTCCTNTT-ATTAATTTAAGT-ATATACATGGTATATATATATATATGTGTGTGTGTGTGTTGGAATTNTGCGTGTT-CCCCCCCCTACCGNCTAGC-TTTTTATTACTCNTTG-TTCCCTTTCTTTCCTTTC-TTTTTTTC-TCCTCATTG-ACCAAATGTT-AACCTA]

[+] EMBL CD081490             [CGGCACGCGGNNAGCAATTGGTTATAAAATAAAACTGTGTGCAACTGTTTTAGTCATTTGGTTAACTGGTATGAATTTCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAATGTGGGATTTCTTAAAATATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTTAGTTGTTGCTTATGGTCCGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATACTACTACTACTAGTATTAGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCATCTCTTCATGAAGTGTAGTAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATGTACTTGTTTGATTCATATTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTCTTTTTTTTTGGTGTCATCCTGGTCAACAACATGAATAGAATTATTTTTCAAATATTGGAACTATTCTATGTATTCTTTTTGTTTCAAATTTCTATAATCTTTTATCCATTCATTGTTTATCTTTGTTTACCCCCCTTTGTTTGTGTCGATTACTTTTTTTTTCTTTTCTTTTTTTTGTTTACATTGCACAATCTTCTCCCCCCTCCGTGTATGTACAGTCTAGGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTANGTGTATGTACATGTGACCAATGAATTACTTTCATCATGTTTCATTTCATTCTCTTTTTTGGTTATTTATTTATATTTTTATTTGGATAGAAATCTTTC ATATTCCTNTT ATTAATTTAAGT ATATACATGGTATATATATATATATGTGTGTGTGTGTGTTGGAATTNTGCGTGTT CCCCCCCCTACCGNCTAGC TTTTTATTACTCNTTG TTCCCTTTCTTTCCTTTC TTTTTTTC TCCTCATTG ACCAAATGTT AACC  ]
[-] EMBL CD075314             [                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTGGTGTCATCCTGGTCAACAACATGAATAGAATTATTTTTCAAATATTGGAACTATTCTATGTATTCTTTTTGTTTCAAATTTCTATAATCTTTTATCCATTCATTGTTTATCTTTGTTTACCCCCCTTTGTTTGTGTCGATTACTTTTTTTTTCTTTTCTTTTTTTTGTTTACATTGCACAATCTTCTCCCCCCTCCGTGTATGTACAGTCTAGGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTAGGTGTATGTACATGTGACCAATGAATTACTTTCATCATGTTTCATTTCATTCTCTTTTTTGTTTATTTATTTATATTTTTATTTGGATAGAAATCTTTCAATATTCCTTTTAATTAATTTAAGTAATATACATGGTATATATATATATATGTGTGTGTGTGTGTTGTAATTTTGCGTGTTCCCCCCCCCTACCGCCTAGCTTTTTTATTACTCTTTGTTTCCTTTTCTTTTCTTTCTTTTTTTTCTTCCTCATTGTACCAAATGTTGAACCTA]




>consensus_5005#0
CGGCACGCGGNNAGCAATTGGTTATAAAATAAAACTGTGTGCAACTGTTTTAGTCATTTG
GTTAACTGGTATGAATTTCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAAT
GTGGGATTTCTTAAAATATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTT
AGTTGTTGCTTATGGTCCGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATA
CTACTACTACTAGTATTAGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCAT
CTCTTCATGAAGTGTAGTAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATG
TACTTGTTTGATTCATATTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTC
TTTTTTTTTGGTGTCATCCTGGTCAACAACATGAATAGAATTATTTTTCAAATATTGGAA
CTATTCTATGTATTCTTTTTGTTTCAAATTTCTATAATCTTTTATCCATTCATTGTTTAT
CTTTGTTTACCCCCCTTTGTTTGTGTCGATTACTTTTTTTTTCTTTTCTTTTTTTTGTTT
ACATTGCACAATCTTCTCCCCCCTCCGTGTATGTACAGTCTAGGTGTGTATGTGTATGTG
TGTGTGTGTGTGTGTANGTGTATGTACATGTGACCAATGAATTACTTTCATCATGTTTCA
TTTCATTCTCTTTTTTGGTTATTTATTTATATTTTTATTTGGATAGAAATCTTTCATATT
CCTNTTATTAATTTAAGTATATACATGGTATATATATATATATGTGTGTGTGTGTGTTGG
AATTNTGCGTGTTCCCCCCCCTACCGNCTAGCTTTTTATTACTCNTTGTTCCCTTTCTTT
CCTTTCTTTTTTTCTCCTCATTGACCAAATGTTAACCTA

consensusID : consensus_5005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [GTAGTATATTTTACGTTATACAATCAATTGGCAACCTAATCTTAATTCTATTAGTAGCAATTGGTTATAAAACAAAACTGTGTGCAACTGTTTTAGTCATTTGGTTAACTGGTATGAATTTCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAATGTGGGATTTCTTAAAATATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTTAGTTGTTGCTTATGGTCCGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATACTACTACTACTAGTATTAGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCATCTCTTCATGAAGTGTAGTAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATGTACTTGTTTGATTCATATTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTCTTTTTTT]

[-] EMBL CD124937             [GTAGTATATTTTACGTTATACAATCAATTGGCAACCTAATCTTAATTCTATTAGTAGCAATTGGTTATAAAACAAAACTGTGTGCAACTGTTTTAGTCATTTGGTTAACTGGTATGAATTTCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAATGTGGGATTTCTTAAAATATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTTAGTTGTTGCTTATGGTCCGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATACTACTACTACTAGTATTAGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCATCTCTTCATGAAGTGTAGTAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATGTACTTGTTTGATTCATATTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTCTTTTTTT]




>consensus_5005#1
GTAGTATATTTTACGTTATACAATCAATTGGCAACCTAATCTTAATTCTATTAGTAGCAA
TTGGTTATAAAACAAAACTGTGTGCAACTGTTTTAGTCATTTGGTTAACTGGTATGAATT
TCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAATGTGGGATTTCTTAAAAT
ATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTTAGTTGTTGCTTATGGTC
CGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATACTACTACTACTAGTATT
AGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCATCTCTTCATGAAGTGTAG
TAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATGTACTTGTTTGATTCATA
TTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTCTTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5005#0      -------------------------------------------CGGCACGCGGNNAGCAA 17
consensus_5005#1      GTAGTATATTTTACGTTATACAATCAATTGGCAACCTAATCTTAATTCTATTAGTAGCAA 60
                                                                             *****

consensus_5005#0      TTGGTTATAAAATAAAACTGTGTGCAACTGTTTTAGTCATTTGGTTAACTGGTATGAATT 77
consensus_5005#1      TTGGTTATAAAACAAAACTGTGTGCAACTGTTTTAGTCATTTGGTTAACTGGTATGAATT 120
                      ************ ***********************************************

consensus_5005#0      TCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAATGTGGGATTTCTTAAAAT 137
consensus_5005#1      TCTATTATAATCGTTTTTGGGCTGTTAGTAATGATAGTTTAATGTGGGATTTCTTAAAAT 180
                      ************************************************************

consensus_5005#0      ATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTTAGTTGTTGCTTATGGTC 197
consensus_5005#1      ATGATTTCTTTCAAACATGGTCAGTTATTGGTGGTTTAGGTTTAGTTGTTGCTTATGGTC 240
                      ************************************************************

consensus_5005#0      CGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATACTACTACTACTAGTATT 257
consensus_5005#1      CGGGTGGAGTGAGTGTAGATGATTATAAAAAGAAATGGTAATACTACTACTACTAGTATT 300
                      ************************************************************

consensus_5005#0      AGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCATCTCTTCATGAAGTGTAG 317
consensus_5005#1      AGTAGTATATGTTGACATTTCTTGATGATTATGATCTATCCATCTCTTCATGAAGTGTAG 360
                      ************************************************************

consensus_5005#0      TAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATGTACTTGTTTGATTCATA 377
consensus_5005#1      TAGTGTATGTCATGAATAGTACTACTACCACCTGATAACAATGTACTTGTTTGATTCATA 420
                      ************************************************************

consensus_5005#0      TTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTCTTTTTTTTTGGTGTCAT 437
consensus_5005#1      TTGCTTCTTTTTCATCTTGTAAAATTATCAATTACCTTCGTTCTTTTTTT---------- 470
                      **************************************************          

consensus_5005#0      CCTGGTCAACAACATGAATAGAATTATTTTTCAAATATTGGAACTATTCTATGTATTCTT 497
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      TTTGTTTCAAATTTCTATAATCTTTTATCCATTCATTGTTTATCTTTGTTTACCCCCCTT 557
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      TGTTTGTGTCGATTACTTTTTTTTTCTTTTCTTTTTTTTGTTTACATTGCACAATCTTCT 617
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      CCCCCCTCCGTGTATGTACAGTCTAGGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTAN 677
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      GTGTATGTACATGTGACCAATGAATTACTTTCATCATGTTTCATTTCATTCTCTTTTTTG 737
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      GTTATTTATTTATATTTTTATTTGGATAGAAATCTTTCATATTCCTNTTATTAATTTAAG 797
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      TATATACATGGTATATATATATATATGTGTGTGTGTGTGTTGGAATTNTGCGTGTTCCCC 857
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      CCCCTACCGNCTAGCTTTTTATTACTCNTTGTTCCCTTTCTTTCCTTTCTTTTTTTCTCC 917
consensus_5005#1      ------------------------------------------------------------
                                                                                  

consensus_5005#0      TCATTGACCAAATGTTAACCTA 939
consensus_5005#1      ----------------------