cluster # 5010

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Schistosoma mansoni
cluster # 5010 cluster # 5010 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5010#0 length = 338 sequences # 1

consensus_5010#1 length = 256 sequences # 1
consensus_5010#2 length = 100 sequences # 1

consensusID : consensus_5010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [GCTACAATTGAGCTCGATGGGGGATCACACTCCTTACGGATCACAAGCCCCTTCTCGCAATTTTTGGTCGAAATCTGGCGTACCGGCCCACTCTGCAAACCGTCTCCAACGATGGGCTTTGATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACAATTTGCCAAGCAGACGCATTGTCACGACTCATCAACGAACACTCTACGACCGATGAAGATGCCGTTATCGCTTCTCTTTCGACAGAAGACCACGCGCAATGCTACCTGACAACCGCTGTTCGTGCTTTGCCAGTCTTAGAATCTGAGATACAAACTGCTTCCAGAAACGA]

[+] EMBL BG930237             [GCTACAATTGAGCTCGATGGGGGATCACACTCCTTACGGATCACAAGCCCCTTCTCGCAATTTTTGGTCGAAATCTGGCGTACCGGCCCACTCTGCAAACCGTCTCCAACGATGGGCTTTGATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACAATTTGCCAAGCAGACGCATTGTCACGACTCATCAACGAACACTCTACGACCGATGAAGATGCCGTTATCGCTTCTCTTTCGACAGAAGACCACGCGCAATGCTACCTGACAACCGCTGTTCGTGCTTTGCCAGTCTTAGAATCTGAGATACAAACTGCTTCCAGAAACGA]




>consensus_5010#0
GCTACAATTGAGCTCGATGGGGGATCACACTCCTTACGGATCACAAGCCCCTTCTCGCAA
TTTTTGGTCGAAATCTGGCGTACCGGCCCACTCTGCAAACCGTCTCCAACGATGGGCTTT
GATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACAATTTGCCAAGCA
GACGCATTGTCACGACTCATCAACGAACACTCTACGACCGATGAAGATGCCGTTATCGCT
TCTCTTTCGACAGAAGACCACGCGCAATGCTACCTGACAACCGCTGTTCGTGCTTTGCCA
GTCTTAGAATCTGAGATACAAACTGCTTCCAGAAACGA

consensusID : consensus_5010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [GTCCACAAATTTTCGTACGGTCGGATGTTCACACTCCTTACGGATCACAAGCCCCTTCTCGCAATTTGTGGTTCGAAGTCTGGCGTCCCTGCCCACTCCGCAAACCGTCTCCAACGATGGGCTTTGATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACATTTTGGTCAAGCAGACGCATTGTCACTGGTCATCAACGAACACTCTACGACCGATGAAGATGCCGTTATCTCTTCTCTTTCGA]

[+] EMBL BG931517             [GTCCACAAATTTTCGTACGGTCGGATGTTCACACTCCTTACGGATCACAAGCCCCTTCTCGCAATTTGTGGTTCGAAGTCTGGCGTCCCTGCCCACTCCGCAAACCGTCTCCAACGATGGGCTTTGATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACATTTTGGTCAAGCAGACGCATTGTCACTGGTCATCAACGAACACTCTACGACCGATGAAGATGCCGTTATCTCTTCTCTTTCGA]




>consensus_5010#1
GTCCACAAATTTTCGTACGGTCGGATGTTCACACTCCTTACGGATCACAAGCCCCTTCTC
GCAATTTGTGGTTCGAAGTCTGGCGTCCCTGCCCACTCCGCAAACCGTCTCCAACGATGG
GCTTTGATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACATTTTGGT
CAAGCAGACGCATTGTCACTGGTCATCAACGAACACTCTACGACCGATGAAGATGCCGTT
ATCTCTTCTCTTTCGA

consensusID : consensus_5010#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 100
fasta sequence

                              [GTATCTCAGTTTCTGAGACTGGCAAAGCACGACCAGCAGTTGTTAGGTAGCATTGCGCGTGGTCTTCTGTCGAAAGAGAAGCAATAACAGCATCTTCGTC]

[+] EMBL CD187751             [GTATCTCAGTTTCTGAGACTGGCAAAGCACGACCAGCAGTTGTTAGGTAGCATTGCGCGTGGTCTTCTGTCGAAAGAGAAGCAATAACAGCATCTTCGTC]




>consensus_5010#2
GTATCTCAGTTTCTGAGACTGGCAAAGCACGACCAGCAGTTGTTAGGTAGCATTGCGCGT
GGTCTTCTGTCGAAAGAGAAGCAATAACAGCATCTTCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5010#0      -GCTACAA--TTGAGCTCGATGGGG-GATCACACTCCTTACGGATCACAAGCCCCTTCTC 56
consensus_5010#1      GTCCACAAATTTTCGTACGGTCGGATGTTCACACTCCTTACGGATCACAAGCCCCTTCTC 60
consensus_5010#2      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCAATTTTTGGT-CGAAATCTGGCGTACCGGCCCACTCTGCAAACCGTCTCCAACGATGG 115
consensus_5010#1      GCAATTTGTGGTTCGAAGTCTGGCGTCCCTGCCCACTCCGCAAACCGTCTCCAACGATGG 120
consensus_5010#2      ------------------------------------------------------------
                                                                                  

consensus_5010#0      GCTTTGATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACAATTTG-C 174
consensus_5010#1      GCTTTGATCCTCTTGGGGTATGATTTTGACATTCAGTATCGACGCACCAAACATTTTGGT 180
consensus_5010#2      -----------------------------------GTATCTCAGTTTCTGAGA--CTGGC 23
                                                         *****   *   *  * *   **  

consensus_5010#0      CAAGCA-GACGCATTGTCACGACTCATCAACGAACAC--TCTACGACCGATGAAGATGCC 231
consensus_5010#1      CAAGCA-GACGCATTGTCACTGGTCATCAACGAACAC--TCTACGACCGATGAAGATGCC 237
consensus_5010#2      AAAGCACGACCAGCAGTTGTTAGGTAGCATTGCGCGTGGTCTTCTGTCGAAAGAGAAGCA 83
                       ***** ***     **        * **  *  *    *** *   ***   *** ** 

consensus_5010#0      GTTATCGCTTCTCTTTCGACAGAAGACCACGCGCAATGCTACCTGACAACCGCTGTTCGT 291
consensus_5010#1      GTTATCTCTTCTCTTTCGA----------------------------------------- 256
consensus_5010#2      ATAACAGCATCTTCGTC------------------------------------------- 100
                       * *   * ***   **                                           

consensus_5010#0      GCTTTGCCAGTCTTAGAATCTGAGATACAAACTGCTTCCAGAAACGA 338
consensus_5010#1      -----------------------------------------------
consensus_5010#2      -----------------------------------------------