cluster # 5017

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Schistosoma mansoni
cluster # 5017 cluster # 5017 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5017#0 length = 475 sequences # 1

consensus_5017#1 length = 450 sequences # 2

consensusID : consensus_5017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [AGTTCAAACCAGGTCTGTTGTGAGATACCAATTCACTGAAGACAGTTGGTGAACTGTTGCTCAACTTCGTGGATTGGTTGAAGTTAGACATAAACATTATCGGATGCCGGCTCAGTGGTTTATTGGCTAAGCGCTTCGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTTGCTGAACGTCCAGTTGTAAACATTGAAATAACTTTTGTTGACATAATACTGTCTTTTACCCTCATTTTAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGCAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATCGATTTCCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGGGAAATAATCGGTATGGTAACCATTGCACAGTTTTTTACTT]

[+] EMBL CD085872             [AGTTCAAACCAGGTCTGTTGTGAGATACCAATTCACTGAAGACAGTTGGTGAACTGTTGCTCAACTTCGTGGATTGGTTGAAGTTAGACATAAACATTATCGGATGCCGGCTCAGTGGTTTATTGGCTAAGCGCTTCGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTTGCTGAACGTCCAGTTGTAAACATTGAAATAACTTTTGTTGACATAATACTGTCTTTTACCCTCATTTTAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGCAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATCGATTTCCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGGGAAATAATCGGTATGGTAACCATTGCACAGTTTTTTACTT]




>consensus_5017#0
AGTTCAAACCAGGTCTGTTGTGAGATACCAATTCACTGAAGACAGTTGGTGAACTGTTGC
TCAACTTCGTGGATTGGTTGAAGTTAGACATAAACATTATCGGATGCCGGCTCAGTGGTT
TATTGGCTAAGCGCTTCGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTTGCTGAACGT
CCAGTTGTAAACATTGAAATAACTTTTGTTGACATAATACTGTCTTTTACCCTCATTTTA
AGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTT
TACTGGAAGACTAACTGTTGCACGCAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTAC
AGAATTCTTGCTGCTATTTGTGTTATCGATTTCCGAAAATTCCCGTCGATCTATTGACTG
GAGATTTTTGACCGGGAAATAATCGGTATGGTAACCATTGCACAGTTTTTTACTT

consensusID : consensus_5017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 450
fasta sequence

                              [TTGTGAATCCTGTTGAGAATATCCCATGAAACGAGGAGCAAATCGTTGAATTTGACTTTTAAAACGACTTGGACTAGTGGAAGAATTAGCCATATCAGGATCCCAAGTTTCTTTCATTAAATCAGCATATGAATGAAATAACAATCCATTCATGGAACTTGATTTATTGATGTCTTTTAAAAATCGATCTTCCAAGCAATACTCGGTAAGTGGAGCAGTGTTACTTAAACATTGAAGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATTGATTTTCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGG]

[-] EMBL CD163778             [TTGTGAATCCTGTTGAGAATATCCCATGAAACGAGGAGCAAATCGTTGAATTTGACTTTTAAAACGACTTGGACTAGTGGAAGAATTAGCCATATCAGGATCCCAAGTTTCTTTCATTAAATCAGCATATGAATGAAATAACAATCCATTCATGGAACTTGATTTATTGATGTCTTTTAAAAATCGATCTTCCAAGCAATACTCGGTAAGTGGAGCAGTGTTACTTAAACATTGAAGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATTGATTTTCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGG]
[-] EMBL CD195665             [                                                                                                                                                                                                                              ACTTAAACATTGAAGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGGGAAGAGTCCAAACAACGT                                                                             ]




>consensus_5017#1
TTGTGAATCCTGTTGAGAATATCCCATGAAACGAGGAGCAAATCGTTGAATTTGACTTTT
AAAACGACTTGGACTAGTGGAAGAATTAGCCATATCAGGATCCCAAGTTTCTTTCATTAA
ATCAGCATATGAATGAAATAACAATCCATTCATGGAACTTGATTTATTGATGTCTTTTAA
AAATCGATCTTCCAAGCAATACTCGGTAAGTGGAGCAGTGTTACTTAAACATTGAAGAAT
CGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATA
TGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGGGAAGA
GTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATTGATTTTCGAAAATTCCCG
TCGATCTATTGACTGGAGATTTTTGACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5017#0      AGTTCAAACCAGGTCTGTTGTGAGATACCAATTCACTGAAGA-CAGTTGGTGAACTGTTG 59
consensus_5017#1      -----TTGTGAATCCTGTTGAGAATATCCCATGAAACGAGGAGCAAATCGTTGAATTTGA 55
                                *   ****** **    ** **  *  ** ** **  * **  * * *  

consensus_5017#0      CTC----AACTTCGTGGATTGGTTGAAG--TTAGACATAAACATTATCGGATGCCGGCTC 113
consensus_5017#1      CTTTTAAAACGACTTGGACTAGTGGAAGAATTAGCCATATCAGGATCCCAAGTTTCTTTC 115
                      **     ***  * **** * ** ****  **** ****        *  *       **

consensus_5017#0      AGTGGTTTATTGGCTAAGCGCTTCGGCGCGAGACTGGTAGGTCCTGGGTT--CGAATCTT 171
consensus_5017#1      ATTAAATCAGCATATGAATGAAATAACAATCCATTCATGGAACTTGATTTATTGATGTCT 175
                      * *   * *     * *  *      *     * *  * *  * **  **   **    *

consensus_5017#0      GCTGAACGTCCAG-TTGTAAACATTG------AAATA----ACTTTTGTTGACATAATAC 220
consensus_5017#1      TTTAAAAATCGATCTTCCAAGCAATACTCGGTAAGTGGAGCAGTGTTACTTAAACATTGA 235
                        * **  ** *  **  ** ** *       ** *     * * **  * * * * *  

consensus_5017#0      TGTCTTTTACCCTCATTTTAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTG 280
consensus_5017#1      AGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTG 295
                       *  *   *  *  *    *****************************************

consensus_5017#0      TGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGCAGAGGACTAGTTAGG 340
consensus_5017#1      TGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGG 355
                      ******************************************** ***************

consensus_5017#0      GAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATCGATTTCCGAAAAT 400
consensus_5017#1      GAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATTGATTTTCGAAAAT 415
                      ********************************************** ***** *******

consensus_5017#0      TCCCGTCGATCTATTGACTGGAGATTTTTGACCGGGAAATAATCGGTATGGTAACCATTG 460
consensus_5017#1      TCCCGTCGATCTATTGACTGGAGATTTTTGACCGG------------------------- 450
                      ***********************************                         

consensus_5017#0      CACAGTTTTTTACTT 475
consensus_5017#1      ---------------