These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [AGTTCAAACCAGGTCTGTTGTGAGATACCAATTCACTGAAGACAGTTGGTGAACTGTTGCTCAACTTCGTGGATTGGTTGAAGTTAGACATAAACATTATCGGATGCCGGCTCAGTGGTTTATTGGCTAAGCGCTTCGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTTGCTGAACGTCCAGTTGTAAACATTGAAATAACTTTTGTTGACATAATACTGTCTTTTACCCTCATTTTAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGCAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATCGATTTCCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGGGAAATAATCGGTATGGTAACCATTGCACAGTTTTTTACTT] [+] EMBL CD085872 [AGTTCAAACCAGGTCTGTTGTGAGATACCAATTCACTGAAGACAGTTGGTGAACTGTTGCTCAACTTCGTGGATTGGTTGAAGTTAGACATAAACATTATCGGATGCCGGCTCAGTGGTTTATTGGCTAAGCGCTTCGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTTGCTGAACGTCCAGTTGTAAACATTGAAATAACTTTTGTTGACATAATACTGTCTTTTACCCTCATTTTAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGCAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATCGATTTCCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGGGAAATAATCGGTATGGTAACCATTGCACAGTTTTTTACTT] consensusID : consensus_5017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 450 fasta sequence [TTGTGAATCCTGTTGAGAATATCCCATGAAACGAGGAGCAAATCGTTGAATTTGACTTTTAAAACGACTTGGACTAGTGGAAGAATTAGCCATATCAGGATCCCAAGTTTCTTTCATTAAATCAGCATATGAATGAAATAACAATCCATTCATGGAACTTGATTTATTGATGTCTTTTAAAAATCGATCTTCCAAGCAATACTCGGTAAGTGGAGCAGTGTTACTTAAACATTGAAGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATTGATTTTCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGG] [-] EMBL CD163778 [TTGTGAATCCTGTTGAGAATATCCCATGAAACGAGGAGCAAATCGTTGAATTTGACTTTTAAAACGACTTGGACTAGTGGAAGAATTAGCCATATCAGGATCCCAAGTTTCTTTCATTAAATCAGCATATGAATGAAATAACAATCCATTCATGGAACTTGATTTATTGATGTCTTTTAAAAATCGATCTTCCAAGCAATACTCGGTAAGTGGAGCAGTGTTACTTAAACATTGAAGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGGGAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATTGATTTTCGAAAATTCCCGTCGATCTATTGACTGGAGATTTTTGACCGG] [-] EMBL CD195665 [ ACTTAAACATTGAAGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTGTGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGGGAAGAGTCCAAACAACGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5017#0 AGTTCAAACCAGGTCTGTTGTGAGATACCAATTCACTGAAGA-CAGTTGGTGAACTGTTG 59 consensus_5017#1 -----TTGTGAATCCTGTTGAGAATATCCCATGAAACGAGGAGCAAATCGTTGAATTTGA 55 * ****** ** ** ** * ** ** ** * ** * * * consensus_5017#0 CTC----AACTTCGTGGATTGGTTGAAG--TTAGACATAAACATTATCGGATGCCGGCTC 113 consensus_5017#1 CTTTTAAAACGACTTGGACTAGTGGAAGAATTAGCCATATCAGGATCCCAAGTTTCTTTC 115 ** *** * **** * ** **** **** **** * * ** consensus_5017#0 AGTGGTTTATTGGCTAAGCGCTTCGGCGCGAGACTGGTAGGTCCTGGGTT--CGAATCTT 171 consensus_5017#1 ATTAAATCAGCATATGAATGAAATAACAATCCATTCATGGAACTTGATTTATTGATGTCT 175 * * * * * * * * * * * * * ** ** ** * consensus_5017#0 GCTGAACGTCCAG-TTGTAAACATTG------AAATA----ACTTTTGTTGACATAATAC 220 consensus_5017#1 TTTAAAAATCGATCTTCCAAGCAATACTCGGTAAGTGGAGCAGTGTTACTTAAACATTGA 235 * ** ** * ** ** ** * ** * * * ** * * * * * consensus_5017#0 TGTCTTTTACCCTCATTTTAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTG 280 consensus_5017#1 AGAATCGAATTCATAAAACAAGTGTTTCCAAGATTATTAAGGCCCACAAGTCCACCTCTG 295 * * * * * ***************************************** consensus_5017#0 TGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGCAGAGGACTAGTTAGG 340 consensus_5017#1 TGATATGAGTGATGAGAGTTTACTGGAAGACTAACTGTTGCACGAAGAGGACTAGTTAGG 355 ******************************************** *************** consensus_5017#0 GAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATCGATTTCCGAAAAT 400 consensus_5017#1 GAAGAGTCCAAACAACGTACAGAATTCTTGCTGCTATTTGTGTTATTGATTTTCGAAAAT 415 ********************************************** ***** ******* consensus_5017#0 TCCCGTCGATCTATTGACTGGAGATTTTTGACCGGGAAATAATCGGTATGGTAACCATTG 460 consensus_5017#1 TCCCGTCGATCTATTGACTGGAGATTTTTGACCGG------------------------- 450 *********************************** consensus_5017#0 CACAGTTTTTTACTT 475 consensus_5017#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||