cluster # 5027

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Schistosoma mansoni
cluster # 5027 cluster # 5027 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5027#0 length = 549 sequences # 2

consensus_5027#1 length = 501 sequences # 1

consensusID : consensus_5027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence

                              [AAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCAGTCGTAAAGCTGTTGAACATTTACTCAGTATGCTGGTCACCATTGTGCCGTACATTTTCAATTCTGACAATAAACAACGTTTAATCAAGTCTGAGGAGTCCGCCAATGCTATTCATTCATCAGGTTGGGATAAGACTCTA]

[+] EMBL CD147169             [AAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCAGTCGTAAAGCTGTTGAACATTTACTCAGTATGCTGGTCACCATTGTGCCGTACATTTTCAATTCTGACAATAAACAACGTTTAATCAAGTCTGAGGAGTCCGCCAATGCTATTCATTCATCAGGTTGGGATAAGACTCTA]
[+] EMBL CD150737             [                                                                                                                                                                                                                                                                                                 cAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCAGTCGTAAAGCTGT                                                                                                                               ]




>consensus_5027#0
AAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTT
CTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGG
CTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGAT
GATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGAT
CGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGAC
ACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATA
CCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCAGTCGTAAAGCT
GTTGAACATTTACTCAGTATGCTGGTCACCATTGTGCCGTACATTTTCAATTCTGACAAT
AAACAACGTTTAATCAAGTCTGAGGAGTCCGCCAATGCTATTCATTCATCAGGTTGGGAT
AAGACTCTA

consensusID : consensus_5027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [GCTCAAGTCGCAGATGTACTTGCCATCACGTATACATGGGAACCAGCTTCCACTAATCGTAATCATAAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCATGTCGTTCGATCATGTCGTGCACGCA]

[-] EMBL CD060205             [GCTCAAGTCGCAGATGTACTTGCCATCACGTATACATGGGAACCAGCTTCCACTAATCGTAATCATAAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCATGTCGTTCGATCATGTCGTGCACGCA]




>consensus_5027#1
GCTCAAGTCGCAGATGTACTTGCCATCACGTATACATGGGAACCAGCTTCCACTAATCGT
AATCATAAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACT
AACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTC
TTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGAT
TTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGT
GCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACA
ACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGT
ATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCATGTCG
TTCGATCATGTCGTGCACGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5027#0      ------------------------------------------------------------
consensus_5027#1      GCTCAAGTCGCAGATGTACTTGCCATCACGTATACATGGGAACCAGCTTCCACTAATCGT 60
                                                                                  

consensus_5027#0      ------AAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACT 54
consensus_5027#1      AATCATAAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACT 120
                            ******************************************************

consensus_5027#0      AACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTC 114
consensus_5027#1      AACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTC 180
                      ************************************************************

consensus_5027#0      TTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGAT 174
consensus_5027#1      TTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGAT 240
                      ************************************************************

consensus_5027#0      TTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGT 234
consensus_5027#1      TTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGT 300
                      ************************************************************

consensus_5027#0      GCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACA 294
consensus_5027#1      GCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACA 360
                      ************************************************************

consensus_5027#0      ACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGT 354
consensus_5027#1      ACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGT 420
                      ************************************************************

consensus_5027#0      ATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCA-GTCG 413
consensus_5027#1      ATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCATGTCG 480
                      ******************************************************* ****

consensus_5027#0      TAAAGCTGTTGAACATTTACTCAGTATGCTGGTCACCATTGTGCCGTACATTTTCAATTC 473
consensus_5027#1      TTCGATCAT--GTCGTGCACGCA------------------------------------- 501
                      *       *    * *  ** **                                     

consensus_5027#0      TGACAATAAACAACGTTTAATCAAGTCTGAGGAGTCCGCCAATGCTATTCATTCATCAGG 533
consensus_5027#1      ------------------------------------------------------------
                                                                                  

consensus_5027#0      TTGGGATAAGACTCTA 549
consensus_5027#1      ----------------