These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence [AAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCAGTCGTAAAGCTGTTGAACATTTACTCAGTATGCTGGTCACCATTGTGCCGTACATTTTCAATTCTGACAATAAACAACGTTTAATCAAGTCTGAGGAGTCCGCCAATGCTATTCATTCATCAGGTTGGGATAAGACTCTA] [+] EMBL CD147169 [AAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCAGTCGTAAAGCTGTTGAACATTTACTCAGTATGCTGGTCACCATTGTGCCGTACATTTTCAATTCTGACAATAAACAACGTTTAATCAAGTCTGAGGAGTCCGCCAATGCTATTCATTCATCAGGTTGGGATAAGACTCTA] [+] EMBL CD150737 [ cAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCAGTCGTAAAGCTGT ] consensusID : consensus_5027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GCTCAAGTCGCAGATGTACTTGCCATCACGTATACATGGGAACCAGCTTCCACTAATCGTAATCATAAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCATGTCGTTCGATCATGTCGTGCACGCA] [-] EMBL CD060205 [GCTCAAGTCGCAGATGTACTTGCCATCACGTATACATGGGAACCAGCTTCCACTAATCGTAATCATAAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACTAACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTCTTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGATTTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGTGCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACAACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGTATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCATGTCGTTCGATCATGTCGTGCACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5027#0 ------------------------------------------------------------ consensus_5027#1 GCTCAAGTCGCAGATGTACTTGCCATCACGTATACATGGGAACCAGCTTCCACTAATCGT 60 consensus_5027#0 ------AAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACT 54 consensus_5027#1 AATCATAAAGCAACTGCATCTTTAAATTATGCTATTCGTTATGCGTCAATTCGGCTAACT 120 ****************************************************** consensus_5027#0 AACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTC 114 consensus_5027#1 AACCTTCTACTTCATGATTCAGTTCAAAGGAATTCAGATCTAGGAATGATTAACGCATTC 180 ************************************************************ consensus_5027#0 TTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGAT 174 consensus_5027#1 TTCAGGCTAAATGGAATAACTCTTTATTTTGGGTTATTTCGTCAGCTGATCAGTTTTGAT 240 ************************************************************ consensus_5027#0 TTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGT 234 consensus_5027#1 TTAGATGATCCAGCTATACGAAAACCACTATCAATTGTATTAGAAGAGTGGCTTGTATGT 300 ************************************************************ consensus_5027#0 GCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACA 294 consensus_5027#1 GCAGATCGTATGAGCAATGCAAGTTTTTGTGCTCCATCTCATTCAGATACTAATCGAACA 360 ************************************************************ consensus_5027#0 ACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGT 354 consensus_5027#1 ACTGACACTGAAGCAAATGCAATGAATGTAAAGAAGATAACTGCACGTGTTCATCAATGT 420 ************************************************************ consensus_5027#0 ATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCA-GTCG 413 consensus_5027#1 ATGATACCTGCACTGGCACAATTATGTTCTCGAACAGATTTGCAGGATTTGCTCATGTCG 480 ******************************************************* **** consensus_5027#0 TAAAGCTGTTGAACATTTACTCAGTATGCTGGTCACCATTGTGCCGTACATTTTCAATTC 473 consensus_5027#1 TTCGATCAT--GTCGTGCACGCA------------------------------------- 501 * * * * ** ** consensus_5027#0 TGACAATAAACAACGTTTAATCAAGTCTGAGGAGTCCGCCAATGCTATTCATTCATCAGG 533 consensus_5027#1 ------------------------------------------------------------ consensus_5027#0 TTGGGATAAGACTCTA 549 consensus_5027#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||