cluster # 5034

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Schistosoma mansoni
cluster # 5034 cluster # 5034 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5034#0 length = 530 sequences # 2

consensus_5034#1 length = 341 sequences # 1

consensusID : consensus_5034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 530
fasta sequence

                              [CAAAAGAGAATGTAAATATGAAAATGGACTGACATTTATCAGTATAGAACATGATTTTGTGGCATGCTTTTCAGAAACATTTAACAAGAATTCATGTTTGGGGACTCTATTGAAATTGAAGGATTCGGACGAAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTCTGAAAAATTAAAAATTGGAGTTACGTAGTTGAAGTACACTTGAAAGATAGATATCTATATTACGTATAGAGGAAACAAGTTTCGACCTTCAGTTCGAAAAAGCACAAGGTCA]

[+] EMBL CD156505             [CAAAAGAGAATGTAAATATGAAAATGGACTGACATTTATCAGTATAGAACATGATTTTGTGGCATGCTTTTCAGAAACATTTAACAAGAATTCATGTTTGGGGACTCTATTGAAATTGAAGGATTCGGACGAAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTC                                                                                                                                                           ]
[-] EMBL CD090372             [                                                                                                                                                                                     AATCGATCA TATTAGGTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATNTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTCTGAAAAATTAAAAATTGGAGTTACGTAGTTGAAGTACACTTGAAAGATAGATATCTATATTACGTATAGAGGAAACAAGTTTCGACCTTCAGTTCGAAAAAGCACAAGGTCA]




>consensus_5034#0
CAAAAGAGAATGTAAATATGAAAATGGACTGACATTTATCAGTATAGAACATGATTTTGT
GGCATGCTTTTCAGAAACATTTAACAAGAATTCATGTTTGGGGACTCTATTGAAATTGAA
GGATTCGGACGAAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCT
GAATCGATCATTATTAGGTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGC
TGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCA
TAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTC
TTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTCTG
AAAAATTAAAAATTGGAGTTACGTAGTTGAAGTACACTTGAAAGATAGATATCTATATTA
CGTATAGAGGAAACAAGTTTCGACCTTCAGTTCGAAAAAGCACAAGGTCA

consensusID : consensus_5034#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [AAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGCTAGGGTTACATAGTTAACAGACTTTACTTACTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTAGATAAAATTCTGGAAATATCTC]

[+] EMBL CD179161             [AAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGCTAGGGTTACATAGTTAACAGACTTTACTTACTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTAGATAAAATTCTGGAAATATCTC]




>consensus_5034#1
AAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCAT
TATTAGGCTAGGGTTACATAGTTAACAGACTTTACTTACTAAAATTAAGATATTTACATT
TCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATT
GGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATT
AGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTC
AATATACGGAAGAAGGTTAGATAAAATTCTGGAAATATCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5034#0      CAAAAGAGAATGTAAATATGAAAATGGACTGACATTTATCAGTATAGAACATGATTTTGT 60
consensus_5034#1      ------------------------------------------------------------
                                                                                  

consensus_5034#0      GGCATGCTTTTCAGAAACATTTAACAAGAATTCATGTTTGGGGACTCTATTGAAATTGAA 120
consensus_5034#1      ------------------------------------------------------------
                                                                                  

consensus_5034#0      GGATTCGGACGAAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCT 180
consensus_5034#1      -----------AAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCT 49
                                 *************************************************

consensus_5034#0      GAATCGATCATTATTAGG--------------------------------TAAAATTAAG 208
consensus_5034#1      GAATCGATCATTATTAGGCTAGGGTTACATAGTTAACAGACTTTACTTACTAAAATTAAG 109
                      ******************                                **********

consensus_5034#0      ATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAA 268
consensus_5034#1      ATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAA 169
                      ************************************************************

consensus_5034#0      CGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTC 328
consensus_5034#1      CGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTC 229
                      ************************************************************

consensus_5034#0      GAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAG 388
consensus_5034#1      GAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAG 289
                      ************************************************************

consensus_5034#0      TGGAAGATTTCAATATACGGAAGAAGGTTCTGAAAAATTAAAAATTGGAGTTACGTAGTT 448
consensus_5034#1      TGGAAGATTTCAATATACGGAAGAAGGTT-----AGATAAAATTCTGGAAATATCTC--- 341
                      *****************************     * ** ***   ****  **  *    

consensus_5034#0      GAAGTACACTTGAAAGATAGATATCTATATTACGTATAGAGGAAACAAGTTTCGACCTTC 508
consensus_5034#1      ------------------------------------------------------------
                                                                                  

consensus_5034#0      AGTTCGAAAAAGCACAAGGTCA 530
consensus_5034#1      ----------------------