These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5041#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 777 fasta sequence [TGATACTACTACTATTACCACTAGTACTACAACACCTTCACCTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGGTATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGTGCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATCATATACTAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCACCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTTCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAAACTACTCTTGGAGGTGATTGTGCCCCCCTGAAATGATGAAATCATATTTATACAGATTCCTATAAAATTATTAAAACTGATATCAATGAATATTAGTTTTCTAAACATACTACTACTACTACTACTTTTAT] [+] EMBL CD145452 [TGATACTACTACTATTACCACTAGTACTACAACACCTTCACCTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGGTATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGTGCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATCATATACTAGTCAAGAACAATCCACCGACCATCATCA ] [+] EMBL BF936072 [ AAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGTGCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATCATATACTAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCACCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTTCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAAACTACTCTTGGAGGTGATTGTGCCCCCCTGAAATGATGAAATCATATTTATACAGATTCCTATAAAATTATTAAAACTGATATCAATGAATATTAGTTTTCTAAACATACTACTACTACTACTACTTTTAT] consensusID : consensus_5041#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [TAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCGCCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTCCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGATATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACAT] [-] EMBL CD116429 [TAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCGCCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTCCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGATATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5041#0 TGATACTACTACTATTACCACTAGTACTACAACACCTTCACCTACTAAGACAAATGATCA 60 consensus_5041#1 ------------------------------------------------------------ consensus_5041#0 GAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGGTATAAT 120 consensus_5041#1 ------------------------------------------------------------ consensus_5041#0 TCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATC 180 consensus_5041#1 ------------------------------------------------------------ consensus_5041#0 TGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGT 240 consensus_5041#1 ------------------------------------------------------------ consensus_5041#0 GCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATC 300 consensus_5041#1 ------------------------------------------------------------ consensus_5041#0 ATATACTAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCACCAACA 360 consensus_5041#1 ------TAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCGCCAACA 54 *********************************************** ****** consensus_5041#0 TCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTC 420 consensus_5041#1 TCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTC 114 ************************************************************ consensus_5041#0 AAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTTCATCAATTACAACAAATCC 480 consensus_5041#1 AAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTCCATCAATTACAACAAATCC 174 **************************************** ******************* consensus_5041#0 AACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAA 540 consensus_5041#1 AACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAA 234 ************************************************************ consensus_5041#0 TAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGT 600 consensus_5041#1 TAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGT 294 ************************************************************ consensus_5041#0 GGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAAACTACTCTT--GGA 658 consensus_5041#1 GGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAGACAAATGATCAGAA 354 ********************************************* ** * * * * * consensus_5041#0 GGTGATTGTGCCCCCCTGAAATGATGAAATCATATTTATACAGAT-TCCTATAAAATT-- 715 consensus_5041#1 TACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGATATAATTCA 414 * * * * **** ** * * ** * ** * *** **** consensus_5041#0 ATTAAAACTGATA--TCAATGAATA--TTAGTTTTCTAAACATACTACTACTACTACTAC 771 consensus_5041#1 ACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGG 474 * * ** ** ** ** *** * * * * *** * ** * ** consensus_5041#0 TTTTAT----------------------------------- 777 consensus_5041#1 ACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACAT 515 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||