cluster # 5041

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Schistosoma mansoni
cluster # 5041 cluster # 5041 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5041#0 length = 777 sequences # 2

consensus_5041#1 length = 515 sequences # 1

consensusID : consensus_5041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 777
fasta sequence

                              [TGATACTACTACTATTACCACTAGTACTACAACACCTTCACCTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGGTATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGTGCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATCATATACTAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCACCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTTCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAAACTACTCTTGGAGGTGATTGTGCCCCCCTGAAATGATGAAATCATATTTATACAGATTCCTATAAAATTATTAAAACTGATATCAATGAATATTAGTTTTCTAAACATACTACTACTACTACTACTTTTAT]

[+] EMBL CD145452             [TGATACTACTACTATTACCACTAGTACTACAACACCTTCACCTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGGTATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGTGCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATCATATACTAGTCAAGAACAATCCACCGACCATCATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BF936072             [                                                                                                                                                                        AAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGTGCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATCATATACTAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCACCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTTCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAAACTACTCTTGGAGGTGATTGTGCCCCCCTGAAATGATGAAATCATATTTATACAGATTCCTATAAAATTATTAAAACTGATATCAATGAATATTAGTTTTCTAAACATACTACTACTACTACTACTTTTAT]




>consensus_5041#0
TGATACTACTACTATTACCACTAGTACTACAACACCTTCACCTACTAAGACAAATGATCA
GAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGGTATAAT
TCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATC
TGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGT
GCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATC
ATATACTAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCACCAACA
TCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTC
AAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTTCATCAATTACAACAAATCC
AACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAA
TAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGT
GGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAAACTACTCTTGGAGG
TGATTGTGCCCCCCTGAAATGATGAAATCATATTTATACAGATTCCTATAAAATTATTAA
AACTGATATCAATGAATATTAGTTTTCTAAACATACTACTACTACTACTACTTTTAT

consensusID : consensus_5041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [TAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCGCCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTCCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGATATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACAT]

[-] EMBL CD116429             [TAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCGCCAACATCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTCCATCAATTACAACAAATCCAACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAGACAAATGATCAGAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGATATAATTCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACAT]




>consensus_5041#1
TAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCGCCAACATCGTCA
TCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTCAAATCC
TTTGACAACTTTATCTTCATTGTCATCATCACCTCCATCAATTACAACAAATCCAACTGA
AAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAATAATGA
TGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGTGGAACA
GGAAGATAATGTTATTGATGATGATATAATTACTACTAAGACAAATGATCAGAATACAAC
TTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGATATAATTCAACCTTT
AGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGGACATAC
TCTTGCATCTAATTCCGAGTTTAGTTCAGAAACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5041#0      TGATACTACTACTATTACCACTAGTACTACAACACCTTCACCTACTAAGACAAATGATCA 60
consensus_5041#1      ------------------------------------------------------------
                                                                                  

consensus_5041#0      GAATACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGGTATAAT 120
consensus_5041#1      ------------------------------------------------------------
                                                                                  

consensus_5041#0      TCAACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATC 180
consensus_5041#1      ------------------------------------------------------------
                                                                                  

consensus_5041#0      TGGACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACATCAACGTCAAGCACTGT 240
consensus_5041#1      ------------------------------------------------------------
                                                                                  

consensus_5041#0      GCTAACTGTTACACCAAAGTTTTTACCACCTGTCAATAATAAAACTAGTCAGGAATCATC 300
consensus_5041#1      ------------------------------------------------------------
                                                                                  

consensus_5041#0      ATATACTAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCACCAACA 360
consensus_5041#1      ------TAGTCAAGAACAATCCACCGACCATCATCATGGTAATCATCAACATCGCCAACA 54
                            *********************************************** ******

consensus_5041#0      TCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTC 420
consensus_5041#1      TCGTCATCACCATCGGCATCATCGTAATTTGTCTCAACTACAACAAAAGTGTTACTGTTC 114
                      ************************************************************

consensus_5041#0      AAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTTCATCAATTACAACAAATCC 480
consensus_5041#1      AAATCCTTTGACAACTTTATCTTCATTGTCATCATCACCTCCATCAATTACAACAAATCC 174
                      **************************************** *******************

consensus_5041#0      AACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAA 540
consensus_5041#1      AACTGAAAGTGAATCACATGTTACTACAATCAATATAAATGACATACAAAATATGAATAA 234
                      ************************************************************

consensus_5041#0      TAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGT 600
consensus_5041#1      TAATGATGATAAAAATAACGAAACACCAAGAATTAAATCAGAAATACATTCAGTCAAAGT 294
                      ************************************************************

consensus_5041#0      GGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAAACTACTCTT--GGA 658
consensus_5041#1      GGAACAGGAAGATAATGTTATTGATGATGATATAATTACTACTAAGACAAATGATCAGAA 354
                      ********************************************* ** * *  *  * *

consensus_5041#0      GGTGATTGTGCCCCCCTGAAATGATGAAATCATATTTATACAGAT-TCCTATAAAATT-- 715
consensus_5041#1      TACAACTTCCAAGTCTACATTTGATAAAGTAGATTCAATGGAAATGTTAGATATAATTCA 414
                          * *       *   *  **** ** *    *  **  * ** *   *** ****  

consensus_5041#0      ATTAAAACTGATA--TCAATGAATA--TTAGTTTTCTAAACATACTACTACTACTACTAC 771
consensus_5041#1      ACCTTTAGTGGTAGATCTATTGATAGCTCGACTAACAAGGCATCGAAGATCTGCATCTGG 474
                      *     * ** **  ** **  ***  *    *  * *  ***   *   ** *  **  

consensus_5041#0      TTTTAT----------------------------------- 777
consensus_5041#1      ACATACTCTTGCATCTAATTCCGAGTTTAGTTCAGAAACAT 515
                         **