cluster # 5042

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Schistosoma mansoni
cluster # 5042 cluster # 5042 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5042#0 length = 369 sequences # 2

consensus_5042#1 length = 145 sequences # 1

consensusID : consensus_5042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 369
fasta sequence

                              [NTCTTTTTTTTTTTTCATTTTTTTAAAATATTCTTATTGCATTTTTATTTTGAAATCGATTTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTACTTTAAAACTGTATAAATCTTCCCCCTAATATTAGTAATAATAAGTAGTAAGTGTTAATTAAGTTTCATTTTTAAAATGGTTCAGATACAAGTCTAATATTATTATTATTATTGTTATTATTATTATTCATTACATTGAAATTGAACTTTTTGACTTCAATATTTGATTTATGCTCAACAGGATCATAAATATTATGATTTGATGAATCTTCTTTATTAATATTATTACTATGATTATTATTATTATTATCAATAT]

[-] EMBL SMRAP167             [NTCTTTTTTTTTTTTCATTTTTTTAAAATATTCTTATTGCATTTTTATTTTGAAATCGATTTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTA                                                                                                                                                                                                                                                                ]
[+] EMBL AW017187             [                                 TTATTGCATTTTTATTTTGAAATCGATTTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTACTTTAAAACTGTATAAATCTTCCCCCTAATATTAGTAATAATAAGTAGTAAGTGTTAATTAAGTTTCATTTTTAAAATGGTTCAGATACAAGTCTAATATTATTATTATTATTGTTATTATTATTATTCATTACATTGAAATTGAACTTTTTGACTTCAATATTTGATTTATGCTCAACAGGATCATAAATATTATGATTTGATGAATCTTCTTTATTAATATTATTACTATGATTATTATTATTATTATCAATAT]




>consensus_5042#0
NTCTTTTTTTTTTTTCATTTTTTTAAAATATTCTTATTGCATTTTTATTTTGAAATCGAT
TTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTACTTTAAA
ACTGTATAAATCTTCCCCCTAATATTAGTAATAATAAGTAGTAAGTGTTAATTAAGTTTC
ATTTTTAAAATGGTTCAGATACAAGTCTAATATTATTATTATTATTGTTATTATTATTAT
TCATTACATTGAAATTGAACTTTTTGACTTCAATATTTGATTTATGCTCAACAGGATCAT
AAATATTATGATTTGATGAATCTTCTTTATTAATATTATTACTATGATTATTATTATTAT
TATCAATAT

consensusID : consensus_5042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [TNATATATAGTGATGTAACACTAATTACCAACAACAACAAGAAATATTTGTAANTCGATTTCAAAATAAAAATGCAATAAGANTATTTCAAANCAATAGGTGAGAGGAAAATGATTATTTATTANTGAGTGAAATACATGANTAG]

[+] EMBL SMRAP172             [TNATATATAGTGATGTAACACTAATTACCAACAACAACAAGAAATATTTGTAANTCGATTTCAAAATAAAAATGCAATAAGANTATTTCAAANCAATAGGTGAGAGGAAAATGATTATTTATTANTGAGTGAAATACATGANTAG]




>consensus_5042#1
TNATATATAGTGATGTAACACTAATTACCAACAACAACAAGAAATATTTGTAANTCGATT
TCAAAATAAAAATGCAATAAGANTATTTCAAANCAATAGGTGAGAGGAAAATGATTATTT
ATTANTGAGTGAAATACATGANTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5042#0      NTCTTTTTTTTTTTTCATTTTTTTAAAATATTCTTATTGCATTTTTATTTTGAAATCGAT 60
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      TTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTACTTTAAA 120
consensus_5042#1      --------------------------------------------------------TNAT 4
                                                                              * * 

consensus_5042#0      ACTGTATAAATCTTCCCCCTAATATTAGTAATAATAAGTAGTAAGTGTTAATTAAGTTTC 180
consensus_5042#1      A-TATAGTGATGTAACACTAATTACCAACAACAACAAGAAATATTTGT-AANTCGATTTC 62
                      * * **   ** *  * *  * **  *  ** ** *** * **  *** ** *   ****

consensus_5042#0      ATTTTTAAAATGGTTCAGATACAAGTCTAATATTATTATTATTATTGTTATTATTATTAT 240
consensus_5042#1      AAAATAAAAATGC----AATAAGANTATTTCAAANCAATAGGTGAGAGGAAAATGATTAT 118
                      *   * ******      ***  * * *   *     **   *      *  ** *****

consensus_5042#0      TCATTACATTGAAATTGAACTTTTTGACTTCAATATTTGATTTATGCTCAACAGGATCAT 300
consensus_5042#1      TTATTAN--TGAG--TGAAATACATGANTAG----------------------------- 145
                      * ****   ***   **** *   *** *                               

consensus_5042#0      AAATATTATGATTTGATGAATCTTCTTTATTAATATTATTACTATGATTATTATTATTAT 360
consensus_5042#1      ------------------------------------------------------------
                                                                                  

consensus_5042#0      TATCAATAT 369
consensus_5042#1      ---------