cluster # 5047

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Schistosoma mansoni
cluster # 5047 cluster # 5047 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5047#0 length = 421 sequences # 1

consensus_5047#1 length = 350 sequences # 2

consensusID : consensus_5047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [TTTTCGATTATCGGCATACGATTAAACTGGAGTCAAATACAGGGTACTAAATAGATGAGCACGTCGATAACTCCATCTTCAATGTCGTCACACGATTACAAGAAGTATATAATGATCTGAAAATATTTCCTCCCCCACCAAGATAATAGATTTGCATTTGTTGATTATGAGGAGAAAACGTTATTTACTTCCATGACATCCTGATTACTACATTACACAGCACCCAAGGTCACACACGTCCGCGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAATACCAGTGATTCAAGGACACACAAACGACATGTTGATCAAATACAATCTCAGGAACCAGGTGTGTTGTTCCAATTTCA]

[+] EMBL CD188343             [TTTTCGATTATCGGCATACGATTAAACTGGAGTCAAATACAGGGTACTAAATAGATGAGCACGTCGATAACTCCATCTTCAATGTCGTCACACGATTACAAGAAGTATATAATGATCTGAAAATATTTCCTCCCCCACCAAGATAATAGATTTGCATTTGTTGATTATGAGGAGAAAACGTTATTTACTTCCATGACATCCTGATTACTACATTACACAGCACCCAAGGTCACACACGTCCGCGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAATACCAGTGATTCAAGGACACACAAACGACATGTTGATCAAATACAATCTCAGGAACCAGGTGTGTTGTTCCAATTTCA]




>consensus_5047#0
TTTTCGATTATCGGCATACGATTAAACTGGAGTCAAATACAGGGTACTAAATAGATGAGC
ACGTCGATAACTCCATCTTCAATGTCGTCACACGATTACAAGAAGTATATAATGATCTGA
AAATATTTCCTCCCCCACCAAGATAATAGATTTGCATTTGTTGATTATGAGGAGAAAACG
TTATTTACTTCCATGACATCCTGATTACTACATTACACAGCACCCAAGGTCACACACGTC
CGCGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGA
ATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAATACCAGTGATTCAAGGA
CACACAAACGACATGTTGATCAAATACAATCTCAGGAACCAGGTGTGTTGTTCCAATTTC
A

consensusID : consensus_5047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 350
fasta sequence

                              [CGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAGTAAGTCATGTTGTAAAGTTCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCTTCAAGTCCATTTGTGTAACGACTGTTTGTTTCTCCTCTAGAGATGATAAACGTAGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTTCGAAAGGTTATTTCCATGTTAAAATGGAAATTCAGAAGCCAGTATGCTGCTTCTCTTC]

[-] EMBL CD159690             [CGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAGTAAGTCATGTTGTAAAGTTCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCTTCAAGTCCATTTGTGTAACGACTGTTTGTTTCTCCTCTAGAGATGATAAACGTAGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTTCGAAAGGTTATTTCCATGTTAAAATGGAAATTCAGAAGCCAGTATGCTGCTTCTCTTC]
[-] EMBL CD159621             [CGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAGTAAGTCATGTTGTAAAGTTCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCTTCAAGTCCATTTGTGTAACGACTGTTCGTTTCTCCTCTAGAGATGATAAACGTAGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTTTGAAAGGTTATTTCCATGTTAAAATGGAAATTCAGAAGCCAGTATGCTGCTTCTCTTC]




>consensus_5047#1
CGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAAT
TGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAGTAAGTCATGTTGTAAAGTT
CATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCTT
CAAGTCCATTTGTGTAACGACTGTTTGTTTCTCCTCTAGAGATGATAAACGTAGCGGTTC
GTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTTCGAAAGGT
TATTTCCATGTTAAAATGGAAATTCAGAAGCCAGTATGCTGCTTCTCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5047#0      TTTTCGATTATCGGCATACGATTAAACTGGAGTCAAATACAGGGTACTAAATAGATGAGC 60
consensus_5047#1      -----------------------------------------------------------C 1
                                                                                 *

consensus_5047#0      ACGTCGATAACTCCA-TCTTCAATGTCGTCACACGATTACAAGAAGTATAT-AATGATCT 118
consensus_5047#1      GTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATT 61
                         *   *****  * **  *  *  *** * *   *** **  * *  **  * **  *

consensus_5047#0      GAAAATATTTCCTCCCCCACCAAGATAATAGATTTGCATTTGTTGATTATGAGGAGAAAA 178
consensus_5047#1      GCAAATCAGTAAACAGACATTTTGACA--AGTTCCATAAAAGTAAGTCATGTTGTAAAGT 119
                      * ****   *   *   **    ** *  ** *    *   **   * ***  *  **  

consensus_5047#0      -CGTTAT--TTACTTCCATGACATCCTGATTACTACATTACACAGCACCCAAGGTCACAC 235
consensus_5047#1      TCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCT 179
                       * ***   * * ***  **   * *    ****  **   ***          * **  

consensus_5047#0      ACGTCCGCGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATT 295
consensus_5047#1      TCAAGTCCATTTGTGTAACGACTGTTTGT-TTCTCCTCTAGAGATGATAAACG------T 232
                       *     * ***   **** *   *     *** * *  * *  * * ****       *

consensus_5047#0      GAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAATACCAGTGATTC 355
consensus_5047#1      AGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTT 292
                         *  * * *  * * **   **    * *   *   **   *    **     **** 

consensus_5047#0      AAGGACACACAAACGACATGTTGATCAAATACAATCTCAGGAACCAGGTGTGTTGTTCCA 415
consensus_5047#1      --CGAAAGGTTATTTCCATGTTA---AAATGGAAATTCAGAAGCCAG-TATGCTGCTTCT 346
                         ** *    *    ******    ****  **  **** * **** * ** ** * * 

consensus_5047#0      ATTTCA 421
consensus_5047#1      CTTC-- 350
                       **